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Report for CCDS86472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86472.1 Public Homo sapiens 15 LRRC49 24 110 108 CCDS HistoryNCBI Gene:54839Re-query CCDS DB by CCDS ID:86472.1Re-query CCDS DB by GeneID:54839See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86472.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000560691.5 ENSP00000454170.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000560691.5Link to Ensembl Protein Viewer:ENSP00000454170.1Re-query CCDS DB by Nucleotide ID:ENST00000560691Re-query CCDS DB by Protein ID:ENSP00000454170
Original member Current member NCBI NM_001363732.2 NP_001350661.1 Accepted alive Link to Nucleotide Sequence:NM_001363732.2Link to Protein Sequence:NP_001350661.1Re-query CCDS DB by Nucleotide ID:NM_001363732Re-query CCDS DB by Protein ID:NP_001350661Link to BLAST:NP_001350661.1

Chromosomal Locations for CCDS 86472.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 70963894 70963932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70980101 70980184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 70984094 70984257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71008379 71008616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71009807 71009992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71012804 71012913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71037179 71037332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 71049409 71049612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGATGCAGCTGCGCCAGCTAGATATGAAGAGAATCACGGAAGAAGAAAGGCGTATGGCATCTGTTTTAG
CCAAAAAAGAGGAAGAGAAGAAGCGGGAAAGTCATAAACAATCTTTGCTTAAGGAGAAGAAAAGGTTAAC
AATTAACAACGTAGCTCGACAGTGGGACTTGCAACAACAACGAGTAGCCAATATTGCTACAAATGAAGAT
AGAAAAGATTCTGACTCTCCTCAGGACCCCTGTCAGATTGATGGAAGCACCCTCTCTGCATTCCCAGAGG
AAACAGGGCCTCTAGACTCAGGACTCAACAATGCTTTACAAGGTTTATCTGTCATAGACACATACCTTGT
TGAAGTGGACGGGGATACACTTTCCCTATATGGCTCAGGAGCACTGGAATCTCTGGATAGGAATTGGAGT
GTTCAAACAGCAGGAATGATCACAACAGTCTCCTTCACTTTCATAGAATTTGATGAAATCGTCCAAGTGC
TTCCTAAACTGAAGATTAAGTTTCCTAATTCTCTGCACCTTAAATTCAAGGAAACAAATCTTGTAATGCT
GCAGCAATTTAACGCACTAGCCCAACTCCGTCGTATTGACCAGTTGACAATTGATCCTCAAGGAAATCCA
GTTGTCAATTTTACACTCTGGAAATACTATGTACTGTTTAGGCTAAGCCATTTCAGTATGCAGAAAATAA
ATGGAACAGAGGTGACACAGAATGATATGATAATGGCTGAAAGGCTCTTTGGAATCCTAGCACATGTAGC
ATCTTCTGAGTTACCCCAGTATCGTCTGATTTCCATTCTGGGTGATGCCAGGAAAAAGCAATTTCGGTAT
CTACTAGAATCCAAAGGAAAAAAACCTGGTATTATCAACGAAGAAAATAATGACAGCAAAAGACTTGTAG
GAGAAAACACAAATCGTGCTACATTAAATTATACTACAAGAGACTTTTATAATGAAAAGCTAGAGGAAAT
AAAGGAAAAGAAGAAATTCTGTAAAACATATATAGAAGACCTTGTGAAGGAAGCCACAGAAATCAACATG
AAAAATGAGGCTTTGCAGAAGCTTTGGCCACAGATGTTCATTGAGCTTGTTAGGGATGCAGTCATAGAAA
TTCGCAATAAAAATTCCTATATGAAGCTCTGCCTACAGCAGATAACAGACCAAAAATAA

Translation (392 aa):
MMQLRQLDMKRITEEERRMASVLAKKEEEKKRESHKQSLLKEKKRLTINNVARQWDLQQQRVANIATNED
RKDSDSPQDPCQIDGSTLSAFPEETGPLDSGLNNALQGLSVIDTYLVEVDGDTLSLYGSGALESLDRNWS
VQTAGMITTVSFTFIEFDEIVQVLPKLKIKFPNSLHLKFKETNLVMLQQFNALAQLRRIDQLTIDPQGNP
VVNFTLWKYYVLFRLSHFSMQKINGTEVTQNDMIMAERLFGILAHVASSELPQYRLISILGDARKKQFRY
LLESKGKKPGIINEENNDSKRLVGENTNRATLNYTTRDFYNEKLEEIKEKKKFCKTYIEDLVKEATEINM
KNEALQKLWPQMFIELVRDAVIEIRNKNSYMKLCLQQITDQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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