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Report for CCDS86652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86652.1 Public Homo sapiens 17 ARL16 24 110 108 CCDS HistoryNCBI Gene:339231Re-query CCDS DB by CCDS ID:86652.1Re-query CCDS DB by GeneID:339231See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86652.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000570561.5 ENSP00000459201.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000570561.5Link to Ensembl Protein Viewer:ENSP00000459201.1Re-query CCDS DB by Nucleotide ID:ENST00000570561Re-query CCDS DB by Protein ID:ENSP00000459201
Original member Current member EBI ENST00000576135.5 ENSP00000461674.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000576135.5Link to Ensembl Protein Viewer:ENSP00000461674.1Re-query CCDS DB by Nucleotide ID:ENST00000576135Re-query CCDS DB by Protein ID:ENSP00000461674
Original member Current member NCBI NM_001329609.2 NP_001316538.1 Accepted alive Link to Nucleotide Sequence:NM_001329609.2Link to Protein Sequence:NP_001316538.1Re-query CCDS DB by Nucleotide ID:NM_001329609Re-query CCDS DB by Protein ID:NP_001316538Link to BLAST:NP_001316538.1

Chromosomal Locations for CCDS 86652.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 81681708 81681879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81682034 81682149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81683013 81683060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (336 nt):
ATGGGCCCCATCTGGTCCAGTTACTATGGAAACTGCCGTTCTCTCCTGTTTGTGATGGACGCCTCTGACC
CCACCCAGCTCTCTGCATCCTGTGTGCAGCTCTTAGGTCTCCTTTCTGCAGAACAACTTGCAGAAGCATC
GGTGCTGATACTCTTCAATAAAATCGACCTACCCTGTTACATGTCCACGGAGGAGATGAAGTCATTAATC
AGGCTTCCAGACATCATTGCTTGTGCCAAGCAGAACATCACCACGGCAGAAATCAGCGCCCGTGAAGGCA
CTGGCTTAGCAGGGGTGCTGGCCTGGCTCCAGGCCACCCACAGAGCCAACGATTGA

Translation (111 aa):
MGPIWSSYYGNCRSLLFVMDASDPTQLSASCVQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLI
RLPDIIACAKQNITTAEISAREGTGLAGVLAWLQATHRAND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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