NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS86729.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86729.1 Public Homo sapiens 19 ZNF253 24 110 108 CCDS HistoryNCBI Gene:56242Re-query CCDS DB by CCDS ID:86729.1Re-query CCDS DB by GeneID:56242See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86729.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355650.4 ENSP00000347868.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355650.4Link to Ensembl Protein Viewer:ENSP00000347868.4Re-query CCDS DB by Nucleotide ID:ENST00000355650Re-query CCDS DB by Protein ID:ENSP00000347868
Original member Current member NCBI NM_001331134.1 NP_001318063.1 Accepted alive Link to Nucleotide Sequence:NM_001331134.1Link to Protein Sequence:NP_001318063.1Re-query CCDS DB by Nucleotide ID:NM_001331134Re-query CCDS DB by Protein ID:NP_001318063Link to BLAST:NP_001318063.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001318063.1 423 O75346-2 423 100% 0 0

Chromosomal Locations for CCDS 86729.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19891476 19892747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGAGTTCTCATTTTGCCCAAGACCTTTGGCCAGAGAACATACAAAATTCTTTCCAAATAGGGATGCTGA
GAAGATATGAAGAATGCAGACATGACAATTTACAGTTAAAAAAAGGCTGTAAAAGCGTGGGTGAGCATAA
GGTGCACAAAGGAGGTTATAATGGACTTAACCAATGTTTGACAACTACCCAGAAAGAAATATTTCAATGT
GATAAATATGGAAAAGTCTTTCATAAGTTTTCAAATTCAAACACATATAAGACAAGACATACTGGAATAA
ATCTTTTCAAATGTATAATATGTGGCAAAGCTTTTAAACGGTCCTCAACCCTTACTACACATAAGAAAAT
TCATACTGGAGAGAAACCTTACAGATGTGAAGAATGTGGCAAAGCTTTTAACCAATCTGCAAACCTTACT
ACACATAAGAGAATTCATACCGGAGAGAAACCCTACAGATGTGAAGAATGTGGCAAAGCCTTTAAGCAGT
CCTCAAACCTTACTACACATAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAA
AGCCTTCAACCGATCCACAGACCTTACTACACATAAGATAGTTCATACTGGAGAGAAACCCTACAAATGT
GAAGAATGTGGCAAAGCCTTTAAGCACCCCTCACACGTTACCACACATAAGAAAATTCATACTAGAGGGA
AACCCTACAACTGTGAAGAATGTGGCAAATCCTTTAAGCACTGCTCTAACCTTACTATACATAAGAGAAT
TCATACAGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTCACCTATCCTCACACCTTACT
ACACATAAGATACTTCATACTGGAGAGAAACCCTACAGATGTAGAGAATGTGGCAAAGCTTTTAACCATT
CCACAACCCTTTTTTCACATGAGAAAATTCATACTGGAGAGAAACCCTACAAATGTGATGAATGTGGCAA
AACCTTTACCTGGCCCTCAATCCTCTCCAAACATAAAAGAACTCATACTGGAGAGAAACCCTACAAATGT
GAAGAATGTGGCAAATCCTTTACTGCATCCTCAACTCTAACTACACATAAGAGAATTCATACTGGAGAGA
AACCTTACAAATGTGAAGAATGTGGCAAAGCTTTTAACTGGTCCTCAGACCTTAATAAACATAAGAAAAT
TCATATTGAACGAAAACCCTACATAGTGAAGAATGTGACAGATCTTTTAAATGTTCCTCCACTTTTAATT
AGCATAAGATAA

Translation (423 aa):
MSSHFAQDLWPENIQNSFQIGMLRRYEECRHDNLQLKKGCKSVGEHKVHKGGYNGLNQCLTTTQKEIFQC
DKYGKVFHKFSNSNTYKTRHTGINLFKCIICGKAFKRSSTLTTHKKIHTGEKPYRCEECGKAFNQSANLT
THKRIHTGEKPYRCEECGKAFKQSSNLTTHKKIHTGEKPYKCEECGKAFNRSTDLTTHKIVHTGEKPYKC
EECGKAFKHPSHVTTHKKIHTRGKPYNCEECGKSFKHCSNLTIHKRIHTGEKPYKCEECGKAFHLSSHLT
THKILHTGEKPYRCRECGKAFNHSTTLFSHEKIHTGEKPYKCDECGKTFTWPSILSKHKRTHTGEKPYKC
EECGKSFTASSTLTTHKRIHTGEKPYKCEECGKAFNWSSDLNKHKKIHIERKPYIVKNVTDLLNVPPLLI
SIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH