NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS86816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86816.1 Public Homo sapiens 2 TMEM18 24 110 108 CCDS HistoryNCBI Gene:129787Re-query CCDS DB by CCDS ID:86816.1Re-query CCDS DB by GeneID:129787See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86816.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405941.3 ENSP00000384347.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405941.3Link to Ensembl Protein Viewer:ENSP00000384347.3Re-query CCDS DB by Nucleotide ID:ENST00000405941Re-query CCDS DB by Protein ID:ENSP00000384347
Original member Current member NCBI NM_001352681.1 NP_001339610.1 Accepted alive Link to Nucleotide Sequence:NM_001352681.1Link to Protein Sequence:NP_001339610.1Re-query CCDS DB by Nucleotide ID:NM_001352681Re-query CCDS DB by Protein ID:NP_001339610Link to BLAST:NP_001339610.1

Chromosomal Locations for CCDS 86816.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 669580 669675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 669757 669850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 672808 672862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 675510 675630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 676574 676639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGGGCACTCGATGGGGTCTGGGCAGAAAGCCGTGCTCCCCTCACCTCCGTGCCTCTGGTCTTCTGCAGA
CGGACTGGACTGAGCCCTGGCTCATGGGGCTGGCCACCTTCCACGCGCTCTGCGTGCTCCTCACCTGCTT
GTCCTCCCGAAGCTACAGACTACAGATCGGGCACTTTCTGTGTCTAGTCATCTTAGTCTACTGTGCTGAA
TACATCAATGAGGCGGCTGCGATGAACTGGAGATTATTTTCGAAATACCAGTATTTCGACTCCAGGGGGA
TGTTCATTTCTATAGTATTTTCAGCCCCACTGCTGGTGAATGCCATGATCATTGTGGTTATGTGGGTATG
GAAGACTTTGAATGTGATGACTGACCTGAAGAATGCACAAGAGAGAAGAAAGGAAAAGAAAAGGAGAAGG
AAAGAAGACTGA

Translation (143 aa):
MGTRWGLGRKPCSPHLRASGLLQTDWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHFLCLVILVYCAE
YINEAAAMNWRLFSKYQYFDSRGMFISIVFSAPLLVNAMIIVVMWVWKTLNVMTDLKNAQERRKEKKRRR
KED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH