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Report for CCDS87123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87123.1 Public Homo sapiens 3 IGSF11 24 110 108 CCDS HistoryNCBI Gene:152404Re-query CCDS DB by CCDS ID:87123.1Re-query CCDS DB by GeneID:152404See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87123.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000491903.1 ENSP00000417413.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000491903.1Link to Ensembl Protein Viewer:ENSP00000417413.1Re-query CCDS DB by Nucleotide ID:ENST00000491903Re-query CCDS DB by Protein ID:ENSP00000417413
Original member Current member NCBI NM_001353323.2 NP_001340252.1 Accepted alive Link to Nucleotide Sequence:NM_001353323.2Link to Protein Sequence:NP_001340252.1Re-query CCDS DB by Nucleotide ID:NM_001353323Re-query CCDS DB by Protein ID:NP_001340252Link to BLAST:NP_001340252.1

Chromosomal Locations for CCDS 87123.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 118902520 118902961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118904648 118904714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118905596 118905718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118926101 118926256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118928509 118928716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118930112 118930275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119034531 119034582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGACTTCTCAGCGTTCCCCTCTGGCGCCTTTGCTGCTCCTCTCTCTGCACGGTGTTGCAGCATCCCTGG
AAGTGTCAGAGAGCCCTGGGAGTATCCAGGTGGCCCGGGGTCAGCCAGCAGTCCTGCCCTGCACTTTCAC
TACCAGCGCTGCCCTCATTAACCTCAATGTCATTTGGATGGTCACTCCTCTCTCCAATGCCAACCAACCT
GAACAGGTCATCCTGTATCAGGGTGGACAGATGTTTGATGGTGCCCCCCGGTTCCACGGTAGGGTAGGAT
TTACAGGCACCATGCCAGCTACCAATGTCTCTATCTTCATTAATAACACTCAGTTATCAGACACTGGCAC
CTACCAGTGCCTGGTCAACAACCTTCCAGACATAGGGGGCAGGAACATTGGGGTCACCGGTCTCACAGTG
TTAGTTCCCCCTTCTGCCCCACACTGCCAAATCCAAGGATCCCAGGATATTGGCAGCGATGTCATCCTGC
TCTGTAGCTCAGAGGAAGGCATTCCTCGACCAACTTACCTTTGGGAGAAGTTAGACAATACCCTCAAACT
ACCTCCAACAGCTACTCAGGACCAGGTCCAGGGAACAGTCACCATCCGGAACATCAGTGCCCTGTCTTCA
GGTTTGTACCAGTGCGTGGCTTCTAATGCTATTGGAACCAGCACCTGTCTTCTGGATCTCCAGGTTATTT
CACGGGCATTCTTTTACTGGAGAAGCAAAAATAAAGAGGAGGAAGAAGAAGAAATTCCTAATGAAATAAG
AGAGGATGATCTTCCACCCAAGTGTTCTTCTGCCAAAGCATTTCACACTGAGATTTCCTCCTCGGACAAC
AACACACTAACCTCTTCCAATGCCTACAACAGTCGATACTGGAGCAACAATCCAAAAGTTCATAGAAACA
CAGAGTCAGTCAGCCACTTCAGTGACTTGGGCCAATCTTTCTCTTTCCACTCAGGCAATGCCAACATACC
ATCCATTTATGCTAATGGGACCCATCTGGTCCCGGGTCAACATAAGACTCTGGTAGTGACAGCCAACAGA
GGGTCATCACCACAGGTGATGTCCAGGAGCAATGGCTCAGTCAGTAGGAAGCCTCGGCCTCCACACACTC
ATTCCTACACCATCAGCCACGCAACACTGGAACGAATTGGTGCAGTACCTGTCATGGTACCAGCCCAGAG
TCGGGCCGGGTCCTTGGTATAG

Translation (403 aa):
MTSQRSPLAPLLLLSLHGVAASLEVSESPGSIQVARGQPAVLPCTFTTSAALINLNVIWMVTPLSNANQP
EQVILYQGGQMFDGAPRFHGRVGFTGTMPATNVSIFINNTQLSDTGTYQCLVNNLPDIGGRNIGVTGLTV
LVPPSAPHCQIQGSQDIGSDVILLCSSEEGIPRPTYLWEKLDNTLKLPPTATQDQVQGTVTIRNISALSS
GLYQCVASNAIGTSTCLLDLQVISRAFFYWRSKNKEEEEEEIPNEIREDDLPPKCSSAKAFHTEISSSDN
NTLTSSNAYNSRYWSNNPKVHRNTESVSHFSDLGQSFSFHSGNANIPSIYANGTHLVPGQHKTLVVTANR
GSSPQVMSRSNGSVSRKPRPPHTHSYTISHATLERIGAVPVMVPAQSRAGSLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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