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Report for CCDS87268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87268.1 Public Homo sapiens 4 REELD1 24 110 108 CCDS HistoryNCBI Gene:345051Re-query CCDS DB by CCDS ID:87268.1Re-query CCDS DB by GeneID:345051See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87268.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000636502.1 ENSP00000490412.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000636502.1Link to Ensembl Protein Viewer:ENSP00000490412.2Re-query CCDS DB by Nucleotide ID:ENST00000636502Re-query CCDS DB by Protein ID:ENSP00000490412
Original member Current member EBI ENST00000623665.2 ENSP00000510273.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000623665.2Link to Ensembl Protein Viewer:ENSP00000510273.1Re-query CCDS DB by Nucleotide ID:ENST00000623665Re-query CCDS DB by Protein ID:ENSP00000510273
Original member Current member NCBI NM_001354631.1 NP_001341560.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001354631.1Link to Protein Sequence:NP_001341560.1Re-query CCDS DB by Nucleotide ID:NM_001354631Re-query CCDS DB by Protein ID:NP_001341560Link to BLAST:NP_001341560.1
Original member Current member NCBI NM_001371071.1 NP_001358000.1 Accepted alive Link to Nucleotide Sequence:NM_001371071.1Link to Protein Sequence:NP_001358000.1Re-query CCDS DB by Nucleotide ID:NM_001371071Re-query CCDS DB by Protein ID:NP_001358000Link to BLAST:NP_001358000.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341560.1 526 A0A1B0GV85 526 100% 0 0
NP_001358000.1 526 A0A1B0GV85 526 100% 0 0

Chromosomal Locations for CCDS 87268.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 146216953 146217160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146222357 146222579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146224445 146224608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146228210 146228522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146229025 146229088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 146229905 146230513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGAGGATGCAGGCTGCCCTCGTGGGCTGGGCTTGTACCACCCTCTGCCTGGCTTCCTGCTCATCTGCCT
TTTCCCATGGTGCCAGCACGGTGGCCTGTGATGACATGCAGCCCAAGCACATCCAAGCCCAGCCTCAGCA
CCAGGACAGCCACCACATCACCATCCACACCCACAGGACTTCCTATGCACCAGGTGACAAGATTCCAGTG
ACAGTGAGAAGCAGTCGTGATTTCATGGGATTTCTCCTTCAGGCTCGAAGAGTGTCCGATCATCAAATCG
CTGGCACTTTCGTTCTCATTCCTCCTCATTCCAAACTGATGACTTGTTTTCAAGAGGCTGATGCAGTCAC
CCACTCTGACAAGTCCCTGAAGAGAAACCTGTCATTCGTGTGGAAGGCCCCAGCCCAGCCTGTGGGGGAC
ATTAAGTTCCTTTTATCAGTAGTCCAGTCATATTTTGTTTACTGGGCAAGGATTGAATCATCTGTTGTGT
CTCAACAGACACATAGCAGCGCCCATTCTGACGACCGCATGGAGCCCAGATTGCTGATGCCAAACCTTCA
CCAGAGGCTGGGCGATGTTGAAGGAGCTGCTCCAGCTCCCAGGACCCCCATCACTCTTCCACAGCAGCAC
ACACATGTCTTTGCTGTTGCCCTTCCTGGAGCTGCAGAGGAGGACAACCTAGATCCTGTTCCTGCCAGTA
TTTGGGTGACAAAGTTTCCTGGGGATGCAGAGACTCTGTCCCAACCATCTTCACACACAGCCACTGAAGG
CAGCATCAACCAGCAACCCAGCGGGGACAGCAATCCCACCCTAGAGCCGTCCCTGGAGGTCCACAGGCTG
GAGAGGCTCGTGGCCCTCAAGAGAGTCTCCTCAGAGAGCTTTGCTTCCAGCCTTAGCACCCATCACAGAA
CTCAGGATGATCCCAGCTTTGATTCACTGGAAACTTGCCTGTCCTCAGATGGGGGTGAACAGGACAAGAC
GAAGGCCTCTAACAGGACCGTGACACAGCCTCCTCTGTCCACCGTCCAGCTTACCTATCCCCAGTGCCTC
TGGTCCTCTGAAACTTTCACAGGGAATGGGGTCAGGGCAAGCAACCCAATCCCTGTCCTCCAGACCTCTG
GCACTTCTGGGCTACCTGCTGCTGGTGACCAGTCAGAGGCATCCAGGGCCTCTGCCAGCTTCTTACCTCA
GTCAAAGCACAAGGAGCTCAGAGCAGGGAAGGGAAATGGAGAGGGTGGAGTGGGATACCCTCGGCAGACC
AACCCACGGCCTGACATTGGGCTAGAGGGAGCCCAGGCCCCTCTGGGTATCCAGCTCAGAACTCCTCAGC
TGGGAATTCTGCTTTGCCTGTCAGCCACCCTGGGCATGGCCCTGGCCGCTGGCCTTCGCTACCTGCACAC
CCAGTATTGCCACCAGCAGACAGAAGTGTCTTTCAGTGAGCCCGCTTCGGATGCTGTTGCCAGGAGCAAC
AGTGGTGAGACTGTGCACGTCAGGAAGATTGGGGAGAACAGTTTTGTTTTGGTTCAAGCAGAGTACAACT
GGATCACTCCTTCTGTGGGTAGCAAGAAAACAGTCCTCTGA

Translation (526 aa):
MRMQAALVGWACTTLCLASCSSAFSHGASTVACDDMQPKHIQAQPQHQDSHHITIHTHRTSYAPGDKIPV
TVRSSRDFMGFLLQARRVSDHQIAGTFVLIPPHSKLMTCFQEADAVTHSDKSLKRNLSFVWKAPAQPVGD
IKFLLSVVQSYFVYWARIESSVVSQQTHSSAHSDDRMEPRLLMPNLHQRLGDVEGAAPAPRTPITLPQQH
THVFAVALPGAAEEDNLDPVPASIWVTKFPGDAETLSQPSSHTATEGSINQQPSGDSNPTLEPSLEVHRL
ERLVALKRVSSESFASSLSTHHRTQDDPSFDSLETCLSSDGGEQDKTKASNRTVTQPPLSTVQLTYPQCL
WSSETFTGNGVRASNPIPVLQTSGTSGLPAAGDQSEASRASASFLPQSKHKELRAGKGNGEGGVGYPRQT
NPRPDIGLEGAQAPLGIQLRTPQLGILLCLSATLGMALAAGLRYLHTQYCHQQTEVSFSEPASDAVARSN
SGETVHVRKIGENSFVLVQAEYNWITPSVGSKKTVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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