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Report for CCDS8774.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8774.1 Public Homo sapiens 12 ARF3 24 110 108 CCDS HistoryNCBI Gene:377Re-query CCDS DB by CCDS ID:8774.1Re-query CCDS DB by GeneID:377See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8774.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000256682.9 ENSP00000256682.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000256682.9Link to Ensembl Protein Viewer:ENSP00000256682.4Re-query CCDS DB by Nucleotide ID:ENST00000256682Re-query CCDS DB by Protein ID:ENSP00000256682
Original member Current member EBI ENST00000541959.5 ENSP00000438510.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541959.5Link to Ensembl Protein Viewer:ENSP00000438510.1Re-query CCDS DB by Nucleotide ID:ENST00000541959Re-query CCDS DB by Protein ID:ENSP00000438510
Original member Current member NCBI NM_001659.3 NP_001650.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001659.3Link to Protein Sequence:NP_001650.1Re-query CCDS DB by Nucleotide ID:NM_001659Re-query CCDS DB by Protein ID:NP_001650Link to BLAST:NP_001650.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001650.1 181 P61204-1 181 100% 0 0

Chromosomal Locations for CCDS 8774.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 48938947 48939108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48939655 48939779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48939997 48940107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48940948 48941095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGGGCAATATCTTTGGAAACCTTCTCAAGAGCCTGATTGGGAAGAAGGAGATGCGCATCCTGATGGTGG
GCCTGGATGCCGCAGGAAAGACCACCATCCTATACAAGCTGAAACTCGGGGAGATCGTCACCACCATCCC
TACCATTGGGTTCAATGTGGAGACAGTGGAGTATAAGAACATCAGCTTTACAGTGTGGGATGTGGGTGGC
CAGGACAAGATTCGACCCCTCTGGAGACACTACTTCCAGAACACCCAAGGGTTGATATTTGTGGTCGACA
GCAATGATCGGGAGCGAGTAAATGAGGCCCGGGAAGAGCTGATGAGAATGCTGGCGGAGGACGAGCTCCG
GGATGCTGTACTCCTTGTCTTTGCAAACAAACAGGATCTGCCTAATGCTATGAACGCTGCTGAGATCACA
GACAAGCTGGGCCTGCATTCCCTTCGTCACCGTAACTGGTACATTCAGGCCACCTGTGCCACCAGCGGGG
ACGGGCTGTACGAAGGCCTGGACTGGCTGGCCAATCAGCTCAAAAACAAGAAGTGA

Translation (181 aa):
MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGG
QDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT
DKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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