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Report for CCDS87878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87878.1 Public Mus musculus 1 Chi3l1 23 108 98 CCDS HistoryNCBI Gene:12654Re-query CCDS DB by CCDS ID:87878.1Re-query CCDS DB by GeneID:12654See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87878.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156873.7 ENSMUSP00000119205.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156873.7Link to Ensembl Protein Viewer:ENSMUSP00000119205.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156873Re-query CCDS DB by Protein ID:ENSMUSP00000119205
Current member NCBI NM_001374626.1 NP_001361555.1 Accepted alive Link to Nucleotide Sequence:NM_001374626.1Link to Protein Sequence:NP_001361555.1Re-query CCDS DB by Nucleotide ID:NM_001374626Re-query CCDS DB by Protein ID:NP_001361555Link to BLAST:NP_001361555.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001361555.1 379 Q61362-3 379 100% 0 0

Chromosomal Locations for CCDS 87878.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 134182257 134182275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134182780 134182809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134183497 134183701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134184124 134184180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134185149 134185299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134186505 134186626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134187870 134187993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134188495 134188677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134189197 134189313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134189481 134189612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGACCCTTCAGCTGGCAGGCTTTGCGGTCCTGATGCTGCTCCAGAGCTGCTCTGCGTACAAGCTGGTCT
GCTACTTCACCAGCTGGTCCCAGTACCGGGAAGGCGTTGGAAGCTTCTTACCAGACGCCATCCAACCTTT
CCTGTGCACCCACATCATCTACAGCTTTGCCAACATCAGCAGCGACAACATGCTTAGCACATGGGAGTGG
AATGACGAGTCGAACTATGACAAGCTGAATAAACTGAAGACCAGAAACACCAACCTGAAGACCCTCCTGT
CTGTTGGAGGGTGGAAATTTGGCGAAAAAAGATTTTCCGAGATTGCCTCCAACACTGAGAGACGCACTGC
TTTCGTCCGGTCGGTAGCCCCGTTCCTGCGTTCTTATGGCTTTGATGGGCTGGATCTCGCCTGGCTCTAC
CCTCGCTTAAGAGACAAGCAGTATTTCTCCACCCTGATCAAGGAACTGAATGCGGAATTCACAAAGGAGG
TCCAGCCAGGCAGAGAGAAACTCCTGCTCAGCGCAGCTTTGTCAGCAGGAAAGGTGGCCATTGACACTGG
CTATGACATCGCCCAGATAGCCCAACACCTGGATTTTATCAATCTCATGACCTACGATTTCCATGGAGTC
TGGCGCCAAATCACAGGCCATCACAGCCCCCTCTTCCAAGGCCAGAAGGACACTAGGTTTGACAGATACA
GCAATGTGAACTATGCCGTGCAGTACATGATACGTCTGGGAGCCCAGGCCAGCAAGCTACTGATGGGCAT
CCCCACCTTTGGGAAGAGCTTCACTCTGGCATCTTCTGAAAATCAGTTGGGAGCTCCAATCTCAGGGGAA
GGATTACCAGGCCGGTTCACCAAGGAGGCAGGGACCCTGGCCTACTACGAGATATGCGACTTCCTCAAAG
GAGCTGAAGTACATCGACTCTCCAACGAGAAGGTTCCCTTCGCTACCAAGGGCAACCAGTGGGTGGGGTA
TGAGGACAAGGAGAGTGTCAAAAACAAGGTTGGGTTCCTGAAGGAGAAGAAGCTGGCAGGAGCCATGGTG
TGGGCACTGGATTTGGATGATTTCCAGGGCACCTGTCAGCCGAAGGAATTCTTCCCGCTCACCAACGCCA
TCAAGGATGCCCTGGCTTAG

Translation (379 aa):
MTLQLAGFAVLMLLQSCSAYKLVCYFTSWSQYREGVGSFLPDAIQPFLCTHIIYSFANISSDNMLSTWEW
NDESNYDKLNKLKTRNTNLKTLLSVGGWKFGEKRFSEIASNTERRTAFVRSVAPFLRSYGFDGLDLAWLY
PRLRDKQYFSTLIKELNAEFTKEVQPGREKLLLSAALSAGKVAIDTGYDIAQIAQHLDFINLMTYDFHGV
WRQITGHHSPLFQGQKDTRFDRYSNVNYAVQYMIRLGAQASKLLMGIPTFGKSFTLASSENQLGAPISGE
GLPGRFTKEAGTLAYYEICDFLKGAEVHRLSNEKVPFATKGNQWVGYEDKESVKNKVGFLKEKKLAGAMV
WALDLDDFQGTCQPKEFFPLTNAIKDALA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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