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Report for CCDS87964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87964.1 Public Mus musculus 10 Ect2l 23 108 98 CCDS HistoryNCBI Gene:100045792Re-query CCDS DB by CCDS ID:87964.1Re-query CCDS DB by GeneID:100045792See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 87964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000208948.1 ENSMUSP00000146899.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208948.1Link to Ensembl Protein Viewer:ENSMUSP00000146899.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208948Re-query CCDS DB by Protein ID:ENSMUSP00000146899
Original member Current member NCBI NM_001370991.1 NP_001357920.1 Accepted alive Link to Nucleotide Sequence:NM_001370991.1Link to Protein Sequence:NP_001357920.1Re-query CCDS DB by Nucleotide ID:NM_001370991Re-query CCDS DB by Protein ID:NP_001357920Link to BLAST:NP_001357920.1

Chromosomal Locations for CCDS 87964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 18129022 18129146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18130593 18130765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18136906 18136994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18138808 18138873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18140260 18140416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18140513 18140586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18141828 18141975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18142893 18143107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18144556 18144642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18157101 18157226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18159750 18159853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18161427 18161609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18163370 18163462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18165483 18165611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18168293 18168461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18169382 18169505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18172672 18172840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18173892 18174144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18175201 18175363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18199922 18200034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18201252 18201353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2862 nt):
ATGTCACTTGGGAGCCTTCCCCTGGAAAGTGTGGAAGTGGAAAGTTTCCACACTCGGTTCAGCGCCTGGA
CA
CCTTTTAAGAACCAGTCCTTAAACAGACAGCTCTTTCAGGAAAGAGTTACTCTCATAAGTCACTGGTT
T
GACCTCTGGACCAACAAGCAACGGCGGGAATTCTTATTCGTGATTCTTTCACAATGCTCAAAATCACAA
TTA
AGGTTCATCCAAGACTGGTTTTCAGAAAGGAAGCAGGTGGCCAGAGTGGATTTCTCAACAGTGTTAC
CA
CGCTTCATTTCTCTTTATATCTTTTCCTTTCTGAATCCGAAAGACTTGTGTGCAGCCGCTCAAGTCAG
C
TGGCCCTGGAAGTTTCTAACGGAACAGGATTGCTTATGGATGCCGAAATGCACTAAGTTCGGATGGTTT
CTG
CCCTACACTCCGACACAGAATGAATACGGAGCTTGGAAGCATCACTACATTGCCTGTGTGTCCAGCT
TG
GACTGGCTAACACCCAGGGAAGCTGCTGCTGTTTATGGGACACTGAATGAGCCCAAAACAGAGGACGA
G
GAATTCCAGGAGAGGCGACGAGAAAAGTGCCTGAGAAAAATTATTTGGGAGAACATTGCCTTCCGCAAG
A
AG
GAGTTATTCAAAGCTCGACCCCCTTGGCTGAGTGGAACGCGCTGCTCCAGGTTGCTAAAAAGTACAA
GC
CTGCCCGGTGGTCCTCAGCTATGGAGAGACGGGACAGGGTTCTACGAAGCCTTGGAGAGACAGTTTCT
T
CGGGCATCTTTAGATGCTTTGCCCAAGCGAAGCAATATCTCTGGAAGTCACTCCTACCCTTTATTATTA
AAG
AAACACCATCATGGGGTTGGTAGAACTGATGCTTTGCCACTACATGCCATCCTGATATCATCGCGGA
TT
CCTGCATATGAGATGGTGATGGAGAGCATCAAGCCAGACGTCGTGGCTGTGCTGTACGAACACAGCGG
A
GTGACATTGGAGGGCCTGCTTCAGCTCACAGACAGAGCTCTACAAGGGCGGAAGGCACAGAGCCTGGGG
ATA
TTCAGCAGTGGAAACAGCAGAGAGATCGACTTGCTGCAAGGCTATAAAATTTGTATTAAAAATGTAC
TG
TGGCCTGAAGTGAGAGACTTCTGGGAGAAACTAGGAAGCCGTGTGGCCACTGAAGAGGAAGGAGGACA
T
GTGGACTTATTTGTGCCACTTGGAGCATCAGAAGCAGGTATAGAAGTTCTTTCTCAGCTGTCTCAACTA
ACT
GGCACATGGTTCTCTGCCCCGACTGGAATCGCAACCGGTTCATACCAACACATTCTTAGTGACTGGC
TG
GGGCCACATCAGGATAGGACTCCTCTTTCTAACTACTTCAGCGAGTCTAAGCTGCAGGCATGGTCCAG
T
TTCACAGAATTCCTGGAAGACACCTTGAAGTCAGTGAGGAAAACGTTAAATCCACTCTTCAAGAACTTG
CAG
AAGAGCATCAGTGGCCGCATGATAGGGCAGTTTATGTTTGACACTCTGGGTATGGACAGCATCCTAA
AT
AACCAAGGCCCTGCACAGGCTCTGGCGGATGGACTGATGGAGCTGTCAAAAGAAGGGTCTGACAAACC
T
CTGGAATTTTTGTCCTATTTTCTGCTGAAGAAATCTAGTAAAACGAACAAGGATTTTGAAGGAAATTAT
GTT
CTGGCAGAATGTGACCTGAAAGAAACACAGGATGCACTCATGAAGGAAGGAAGTGCCATCGAAGACA
AT
TCTCAGGACTCGAAGTCAAGTCCAGGCCAAAGCAACCTGAATGTGGAGGTTCTGGTTAAGCTGGAGAG
G
AAGCTCCAGATGAACTCAGTAGAGACACGAGCCCAAGTTGTGAGGGAGCTTGTGCAGAGCGAGAGACGG
TAC
GTGCAGATGCTGCGAATTGTGCAGGACGTGTACGCCAAGCCCCTGAGGGCAGCGCTCTCCTCAAACA
GA
GCCATTCTGAGTGCTGCCAATATCCACATCATTTTTTCTGACATTCTGCACATCTTAAACCTCAACAG
A
GAGTTTCTAGATAACCTACGAGACAGACTACAGGAATGGAGCCCAGCTCACTGTGTGGGAGAAATATTC
ATA
AAGTTTGGAAGCCAGCTGAACATATATACCAATTTCTTCAACAATTATCCAGTTGTTCTGAAAACCA
TC
GAAAAGTGCAGAGAAATGACACCCGCGTTTAGAGCATTCTTGAAGAGGCATGATAAAACCATTGTTAC
C
AAAATGCTGAGTCTGCCGGAGCTGCTGATATACCCGTCCCGGAGATTTGAAGAATATATTCACCTTCTC
TAT
GCTCTGAGACTCCATACTCCGGCAGGACACGTGGACCGTGGAGACCTGACCACTGCAATTGATCAAG
TC
AAAAAATATAAAGGCTACATAGATCAGATAAAGGAAAACTTGAAGATGAGAGAGCAGCTGTCCGATGT
A
CAGACACTCATTTGTGGCTGTCCGACTTTATCAGAAGCAAACAGATACCTGATTCGGACCCAAGATGTG
GTT
CAACTTCACTGCTGTGATGAGAAAATGGACTTCTCTTTAAGGCTCTACGAACAGATCCGAGACCTCA
GC
CTCCTCCTCTTCAATGATGTACTCCTTGTTAGCAGTCGGAGTACATCTCATACTCCATTTGAAAAGAC
T
TCTAAAACAACCTACCAGTTCACCGCATCAGTGGCCCTTCCCAGGCTGCTCATAGAAGACATTCCAGAC
TCC
AAATACATCAAGAATGCATTTATTCTTCGAGGTTCAAAACGAGAATGGATCTGCGCTACCGAGGTGT
CA
GATGACAAATTCCTTTGGCTGTCAGTACTCCAGCATGCAATCAGAAGCAGTATGAAGTAA


Translation (953 aa):
MSLGSLPLESVEVESFHTRFSAWTPFKNQSLNRQLFQERVTLISHWFDLWTNKQRREFLFVILSQCSKSQ
L
RFIQDWFSERKQVARVDFSTVLPRFISLYIFSFLNPKDLCAAAQVSWPWKFLTEQDCLWMPKCTKFGWF
L
PYTPTQNEYGAWKHHYIACVSSLDWLTPREAAAVYGTLNEPKTEDEEFQERRREKCLRKIIWENIAFRK

K
ELFKARPPWLSGTRCSRLLKSTSLPGGPQLWRDGTGFYEALERQFLRASLDALPKRSNISGSHSYPLLL
K
KHHHGVGRTDALPLHAILISSRIPAYE
MVMESIKPDVVAVLYEHSGVTLEGLLQLTDRALQGRKAQSLG
I
FSSGNSREIDLLQ
GYKICIKNVLWPEVRDFWEKLGSRVATEEEGGHVDLFVPLGASEAGIEVLSQLSQL
T
GTWFSAPTGIATGSYQH
ILSDWLGPHQDRTPLSNYFSESKLQAWSSFTEFLEDTLKSVRKTLNPLFKNL
Q
KSISGRMI
GQFMFDTLGMDSILNNQGPAQALADGLMELSKEGSDKPLEFLSYFLLKKSSKTNKDFEGNY
V
LAECDLKETQDALMK
EGSAIEDNSQDSKSSPGQSNLNVEVLVKLERKLQMNSVETRAQVVRELVQSERR
Y
VQMLRIVQDVYAKPLRAALSSNRAILSAANIHIIFSDILHILNLN
REFLDNLRDRLQEWSPAHCVGEIF
I
KFGSQLNIYTNFFNNYPVVLKTIEK
CREMTPAFRAFLKRHDKTIVTKMLSLPELLIYPSRRFEEYIHLL
Y
ALRLHTPAGHVDRGDLTTAIDQVKKYKGYIDQ
IKENLKMREQLSDVQTLICGCPTLSEANRYLIRTQDV
V
QLHCCDEKMDFSL
RLYEQIRDLSLLLFNDVLLVSSRSTSHTPFEKTSKTTYQFTASVALPRLLIEDIPD
S
K
YIKNAFILRGSKREWICATEVSDDKFLWLSVLQHAIRSSMK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser