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Report for CCDS88018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88018.1 Public Mus musculus 10 Rtkn2 23 108 98 CCDS HistoryNCBI Gene:170799Re-query CCDS DB by CCDS ID:88018.1Re-query CCDS DB by GeneID:170799See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068994.13 ENSMUSP00000070717.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068994.13Link to Ensembl Protein Viewer:ENSMUSP00000070717.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068994Re-query CCDS DB by Protein ID:ENSMUSP00000070717
Original member Current member EBI ENSMUST00000118160.7 ENSMUSP00000112946.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118160.7Link to Ensembl Protein Viewer:ENSMUSP00000112946.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118160Re-query CCDS DB by Protein ID:ENSMUSP00000112946
Original member Current member NCBI NM_001359318.1 NP_001346247.1 Accepted alive Link to Nucleotide Sequence:NM_001359318.1Link to Protein Sequence:NP_001346247.1Re-query CCDS DB by Nucleotide ID:NM_001359318Re-query CCDS DB by Protein ID:NP_001346247Link to BLAST:NP_001346247.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346247.1 604 Q14B46-1 604 100% 0 0

Chromosomal Locations for CCDS 88018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 67979774 67979812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67987307 67987512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 67997565 67997623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68001924 68001977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68003204 68003321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68005500 68005694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68017806 68017900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68025513 68025619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68026518 68026649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68035789 68035951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68040031 68040138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68041379 68041917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGGAGGGGCAGCTGCTGAGGGGTCTCGCCGCGCAGCAGGACTGCAGCATCCGAGAGAAAATAGACTTAG
AGATCCGCATGCGAGAAGGAATATGGAAGCTGCTCTCGCTGAGTACGAAAAAAGACCAAGTTTTGCATGC
AGTTAAGAACCTCATGGTGTGCAGTGCTCGGATCCAGGCGTACACGGCAGAGCTGCAGAAGTCAAAAGAA
GAGATTGCAAATCAAACCGGAGCACGGTTAGTGCTGGATTCGAGTTCTGAAAATAAAGAAGGAGAATCCT
GCAGAGGAAAGATCGCCCTGTCAGATATCCGAATACCATTAATGTGGAAAGACTCCGATCACTTCAGTAA
TAAAGAATGCACACAGCGCTTCGCCATCTTTTGCTTATTCAGGATGGGAGCTCAGGTGTTTGACACGGAC
ATGGTGATTGTGGACCAGACAGTCACAGATATATGTTTCGAAAATGTCACCATCTTCAACGAGGCAGGAC
CGGACTTCCAGATAAAGATAGAAGTCTACAGCTGCAGCGCAGAGGAGTCCTCCCTAACCAACACCCCGAG
GAAGCTGGCTAAGAAGCTGAAGACGTCCATCAGCAAAGCCACGGGAAGGAAAATCAGCGCAGCGCTCCAG
GAAGAGAGCCCAGAGGCGTGCTTGCTCGCTGGTTCTGTGGCAGGTGCAAAGTACCATTTGCTGGCTCATA
CCACCCTGACCTTGGAAAATGCTGGAGACTGCTTTAAGACCCATAACCTGTCTGTTCACGGAGATGAGGA
GTGTTCCTTTTGGCTTCCCTTGTATGGCAACGTGTGCTGCCGGCTGGTGGCCCAGCCAGCTTGCATGGCT
GCAGATGCATTTGCAGGATTCCTTAATGAACAGCAAACAGGAAAAGGTCTGGTTGGCTGGAGAAGGCTGT
ACTGTGCTCTGAGAGGGGGTAAACTCCGCTGCTTTTATGGTCCGGAAGAAATTGAAGCTAAAGTGGAGCC
GGCTCTGGTGGTTCCTATTGACAAGGAAACCAGAATTCAGGCCGTGGAAAAGGATTCAAAGAAAATGCAC
TGTTTCTCTGTCCTCAGCACAGCCGCTGGGCGGGCGGTGAGTCACATCTTTGCGGCTGACAGCCTAGCAG
ACTTTCAGGAGTGGATGGGCGCCTTCCGGCAACATTTCTTTGATCTCAGCCAATGGAAGCATTGTTGTGA
AGAACTTATGAGAATTGAGATTATGTCACCACGAAAACCACCTTTGTTCCTGGCAAAGGAGGCGACCTCA
GTGTATTATGATATGAGCATCGATTCACCCGTGAAACTGGAAAGTGTAACAGACATAATACAAAAGAAAA
TCGGAGAGACCAACCGACAGTTCCTCATTGGTCGGGATGACCAATCCGCAGCACCCCCGTGGGCCGCTGT
CTTTGATGGCAATCACGAAATGGTCATAGAGAAGAAAGTGTTGTCCCCAATAGGCGAACCGGCTCCGGAT
GGAAAAAGAAAAAAGAGGCGAGCCCCACTCCCTCCTACCGATCAGCCGCCCTTCTGCATAAAAACCCAGG
GTAGAGCGAATCAGTCCAAGGACAGCGCAACCCAGGCTGGGGTCTCTGGAGCCTCATCTTCGCCTTCGGA
TCCCAGACTGTCGCCGCCTACGCATCATCTCCAGAAACCTGTGGCAGCCCCTCGCAAACTTCTCCCTGCC
AGGAAGAACAGTTCAGCGGACATTGGGCACACGGACACTAAAACCAGCCTTGATGCGAAGCCAGTGCCAG
TTCCAAGGCAGAAATCCATCAGAGACATTCTGGACCCACGATCTTGGCTCCAAGCACAAGTATAG

Translation (604 aa):
MEGQLLRGLAAQQDCSIREKIDLEIRMREGIWKLLSLSTKKDQVLHAVKNLMVCSARIQAYTAELQKSKE
EIANQTGARLVLDSSSENKEGESCRGKIALSDIRIPLMWKDSDHFSNKECTQRFAIFCLFRMGAQVFDTD
MVIVDQTVTDICFENVTIFNEAGPDFQIKIEVYSCSAEESSLTNTPRKLAKKLKTSISKATGRKISAALQ
EESPEACLLAGSVAGAKYHLLAHTTLTLENAGDCFKTHNLSVHGDEECSFWLPLYGNVCCRLVAQPACMA
ADAFAGFLNEQQTGKGLVGWRRLYCALRGGKLRCFYGPEEIEAKVEPALVVPIDKETRIQAVEKDSKKMH
CFSVLSTAAGRAVSHIFAADSLADFQEWMGAFRQHFFDLSQWKHCCEELMRIEIMSPRKPPLFLAKEATS
VYYDMSIDSPVKLESVTDIIQKKIGETNRQFLIGRDDQSAAPPWAAVFDGNHEMVIEKKVLSPIGEPAPD
GKRKKRRAPLPPTDQPPFCIKTQGRANQSKDSATQAGVSGASSSPSDPRLSPPTHHLQKPVAAPRKLLPA
RKNSSADIGHTDTKTSLDAKPVPVPRQKSIRDILDPRSWLQAQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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