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Report for CCDS88056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88056.1 Public Mus musculus 10 Sgta 23 108 98 CCDS HistoryNCBI Gene:52551Re-query CCDS DB by CCDS ID:88056.1Re-query CCDS DB by GeneID:52551See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88056.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000218208.1 ENSMUSP00000151949.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218208.1Link to Ensembl Protein Viewer:ENSMUSP00000151949.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218208Re-query CCDS DB by Protein ID:ENSMUSP00000151949
Original member NCBI NM_001358550.1 NP_001345479.1 Updated not alive Link to Nucleotide Sequence:NM_001358550.1Link to Protein Sequence:NP_001345479.1Re-query CCDS DB by Nucleotide ID:NM_001358550Re-query CCDS DB by Protein ID:NP_001345479
Current member NCBI NM_001358550.2 NP_001345479.1 Accepted alive Link to Nucleotide Sequence:NM_001358550.2Link to Protein Sequence:NP_001345479.1Re-query CCDS DB by Nucleotide ID:NM_001358550Re-query CCDS DB by Protein ID:NP_001345479Link to BLAST:NP_001345479.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345479.1 314 Q8BJU0-2 314 100% 0 0

Chromosomal Locations for CCDS 88056.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81046195 81046312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81046475 81046564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81047639 81047676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81048380 81048442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81048838 81048976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81049253 81049357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81049782 81049881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81050999 81051083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81051223 81051329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81052116 81052215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGACAACAGGAAGCGCCTGGCCTATGCCATCATCCAGTTCCTCCATGGCCAGTTGCGGCACGGTGGGC
TCTCGTGTGACGCCCAGGAGAGCCTAGAGGTTGCCATCCAGTGTCTGGAGACAGCCTTCGGGGTGACGCT
GGAGGACAGTGACCTTGCTCTCCCCCAGACCCTGCCAGAGATATTTGAAGCAGCCACTTCCAGCAAGGAG
ATGCCACAGGACCCGCGGGCCCCTGACAGGACACCACCCTCTGAAGAGGACTCAGCTGAGGCAGAGCGCC
TCAAAACGGAAGGTAATGAGCAGATGAAGCTGGAGAACTTCGAGGCGGCTGTGCACCTCTACGGCAAGGC
CATTGAGCTCAACCCTGCCAATGCTGTCTACTTCTGTAACAGAGCTGCGGCCTACAGCAAGCTGGGGAAC
TACGTGGGGGCCGTGCAGGACTGCGAGCGCGCCATTGGCATCGACCCTGGGTATAGCAAGGCCTATGGCC
GCATGGGCCTTGCACTATCCAGCCTGAACAAGCATGCAGAGGCTGTGGCATACTACAAGAAGGCCCTGGA
GCTGGACCCTGACAACGACACATACAAGTCCAACCTCAAGATTGCAGAGCTGAAGTTACGGGAGGCGCCA
AGCCCTACGGGCGGCGTGGGCAGCTTAGACATCGCTGGCCTGCTGAACAACCCACACTTCATCACCATGG
CTTCGAGCTTAATGAACAGCCCCCAGCTACAGCAGCTCATGTCGGGCATGATCTCCGGAGGCCATAACCC
TCTGGGCACGCCAGGCAGCAGTCCGCAGCAGAGTGACCTGGCCAGCCTCATCCAGGCGGGCCAACAGTTT
GCACAGCAGATGCAGCAGCAGAACCCAGAGTTTGTGGAGCAGATCCGGAGCCAGGTGGTGCGCAGCCGGA
CACCCAGTGCCAGCCATGAGGAGCAGCAAGAGTGA

Translation (314 aa):
MDNRKRLAYAIIQFLHGQLRHGGLSCDAQESLEVAIQCLETAFGVTLEDSDLALPQTLPEIFEAATSSKE
MPQDPRAPDRTPPSEEDSAEAERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGN
YVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDNDTYKSNLKIAELKLREAP
SPTGGVGSLDIAGLLNNPHFITMASSLMNSPQLQQLMSGMISGGHNPLGTPGSSPQQSDLASLIQAGQQF
AQQMQQQNPEFVEQIRSQVVRSRTPSASHEEQQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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