NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88117.1 Public Mus musculus 10 Sarnp 23 108 98 CCDS HistoryNCBI Gene:66118Re-query CCDS DB by CCDS ID:88117.1Re-query CCDS DB by GeneID:66118See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88117.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000219512.1 ENSMUSP00000151656.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219512.1Link to Ensembl Protein Viewer:ENSMUSP00000151656.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219512Re-query CCDS DB by Protein ID:ENSMUSP00000151656
Original member Current member NCBI NM_001359406.1 NP_001346335.1 Accepted alive Link to Nucleotide Sequence:NM_001359406.1Link to Protein Sequence:NP_001346335.1Re-query CCDS DB by Nucleotide ID:NM_001359406Re-query CCDS DB by Protein ID:NP_001346335Link to BLAST:NP_001346335.1
Original member Current member NCBI NM_001359407.1 NP_001346336.1 Accepted alive Link to Nucleotide Sequence:NM_001359407.1Link to Protein Sequence:NP_001346336.1Re-query CCDS DB by Nucleotide ID:NM_001359407Re-query CCDS DB by Protein ID:NP_001346336Link to BLAST:NP_001346336.1

Chromosomal Locations for CCDS 88117.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128839868 128839869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128846532 128846583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128848237 128848310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128848761 128848789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128851157 128851182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128853183 128853251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128872421 128872510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128877333 128877374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGGCATCGGAAAAGAAGGTGGTAAAGATTACATCTGGGATACCTCAGACTGAAAGAATGCAGAAGAGGG
CTGAACGATTCAATGTACCTGTAAGCCTGGAGAGTAAGAAGGCTGCCCGGGCGGCTAGGTTTGGAATTTC
TTCAGTTCCAACAAAAGGTTTATCATCTGACACCAAGCCTATGGTTAACCTGGATAAACTAAAGGAAAGA
GCACAGAGATTTGGTTTGAATGTCTCTTCCATCTCTAGAAAGTCTGAGGATGATGAGAAGCTGAAGAAAC
GGAAGGAGAGATTTGGGATTGTGACAAGTTCAGCTGGAACTGGAACCACAGAGGATACAGAGGCAAAGAA
AAGAAAAAGAGCAGAGCGTTTTGGAATTGCATAA

Translation (127 aa):
MASEKKVVKITSGIPQTERMQKRAERFNVPVSLESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKER
AQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRKRAERFGIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH