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Report for CCDS88219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88219.1 Public Mus musculus 11 Tom1l1 23 108 98 CCDS HistoryNCBI Gene:71943Re-query CCDS DB by CCDS ID:88219.1Re-query CCDS DB by GeneID:71943See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88219.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107867.7 ENSMUSP00000103499.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107867.7Link to Ensembl Protein Viewer:ENSMUSP00000103499.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107867Re-query CCDS DB by Protein ID:ENSMUSP00000103499
Original member Current member NCBI NM_001357547.1 NP_001344476.1 Accepted alive Link to Nucleotide Sequence:NM_001357547.1Link to Protein Sequence:NP_001344476.1Re-query CCDS DB by Nucleotide ID:NM_001357547Re-query CCDS DB by Protein ID:NP_001344476Link to BLAST:NP_001344476.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344476.1 227 Q923U0-2 227 100% 0 0

Chromosomal Locations for CCDS 88219.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 90646836 90646899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90649348 90649423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90649786 90649888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90651911 90651962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90656351 90656450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90657714 90657831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90658148 90658208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90661756 90661865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGCAGGAGAGGATCATGGACCTGCTGGTGGTGGTGGAAAATGAAGACGTGACTATGGAGCTAATTCAAG
TGAACGAGGATCTGAATAATGCCGTCCTTGGATATGAGAGGTTTACTCGAAACCAACAAAGGCTTTTGGA
ACAGAAGAGGAACCGGACAGAAGCAACCCGTACTTCCAGCGAGCCCTCTGCTCCTTCCTGCGATCTCCTC
GACCTAAGCCCCATCGTGCCAGTGCCTACGCCCAATGAGGGAGCACTCAACTCCGTGAACGCCCAGCTTT
CAGGCCTAAGTGTCAGCTCTCTGAGCCCTGTTATAACAAACAACTTGTATCCCAGTCTTCAGCCACAGAG
GGATTTACTAGCATCAGAAGATATAGAAATACCCACCTTGTTTCCCCAGAGGACCAGCCAAAACCTCGCC
TCGAGTCACACATATGATAATTTTCACTCCAATTCAGTATTACTCCAGCCAGTTAGCCTACACACCGCCA
CAGCAGCAGCAGCAGCAAACCAGAGGCTGCCACCCTTGCCAAGCAGTCATCCAGTGCTAAAAGACGGCGA
TCTCCAGCCACCCAATTACTACGAGGTAATGGAGTTTGATCCCTTAGCTCCCACTACAGAAGCTGTTTAT
GAAGAAATTGATGGTTACCACCAGAAAGAAGCTCAAAGTCATAGTGACTGCTAA

Translation (227 aa):
MQERIMDLLVVVENEDVTMELIQVNEDLNNAVLGYERFTRNQQRLLEQKRNRTEATRTSSEPSAPSCDLL
DLSPIVPVPTPNEGALNSVNAQLSGLSVSSLSPVITNNLYPSLQPQRDLLASEDIEIPTLFPQRTSQNLA
SSHTYDNFHSNSVLLQPVSLHTATAAAAANQRLPPLPSSHPVLKDGDLQPPNYYEVMEFDPLAPTTEAVY
EEIDGYHQKEAQSHSDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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