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Report for CCDS88220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88220.1 Public Mus musculus 11 Tom1l1 23 108 98 CCDS HistoryNCBI Gene:71943Re-query CCDS DB by CCDS ID:88220.1Re-query CCDS DB by GeneID:71943See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88220.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107869.8 ENSMUSP00000103501.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107869.8Link to Ensembl Protein Viewer:ENSMUSP00000103501.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107869Re-query CCDS DB by Protein ID:ENSMUSP00000103501
Original member Current member NCBI NM_001357544.1 NP_001344473.1 Accepted alive Link to Nucleotide Sequence:NM_001357544.1Link to Protein Sequence:NP_001344473.1Re-query CCDS DB by Nucleotide ID:NM_001357544Re-query CCDS DB by Protein ID:NP_001344473Link to BLAST:NP_001344473.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344473.1 398 Q923U0-3 398 100% 0 0

Chromosomal Locations for CCDS 88220.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 90646836 90646899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90649348 90649423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90649786 90649888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90651911 90651962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90656351 90656450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90657714 90657831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90658148 90658208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90661756 90661889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90671084 90671200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90674670 90674819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90683235 90683313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90685062 90685146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 90687513 90687570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGGCGTTTGGGAAGAGTCACCGCGATCCTTACGCTACCTCTGTGGGTCACCTCATAGAAAAGGCCACTT
TTGCTGGAGTTCTGACTGAAGACTGGGGCCAGTTCCTGCACATCTGTGACATAATTAACACCACACAGGA
CGGGCCAAAAGATGCAGTAAAAGCTTTGAAGAAAAGGATCTCCAAAAACTATAACCACAAAGAAATCCAA
CTTTCCTTATCACTCATTGACATGTGCGTGCAGAACTGTGGCCCGAGTTTCCAATCTCTGATTGTGAAGA
AGGAGTTCATTAAAGATACTCTAGTTAAGCTGCTGAATCCCAGATACACCTTACCGCTGGAGACCCAGAA
CAGAATCTTGAATTTCATTAAGATCGGGAAGCTGCATAGTGAACTAGATATGGTGAAAATGAATGTGAAA
GTGATGACAGCCATATTGATGGAGAATACTCCTGGCTCTGAAAACCATGAAGACATCGAGCTCCTGCGGA
AACTTTACAAGACAGGTCGGGAGATGCAGGAGAGGATCATGGACCTGCTGGTGGTGGTGGAAAATGAAGA
CGTGACTATGGAGCTAATTCAAGTGAACGAGGATCTGAATAATGCCGTCCTTGGATATGAGAGGTTTACT
CGAAACCAACAAAGGCTTTTGGAACAGAAGAGGAACCGGACAGAAGCAACCCGTACTTCCAGCGAGCCCT
CTGCTCCTTCCTGCGATCTCCTCGACCTAAGCCCCATCGTGCCAGTGCCTACGCCCAATGAGGGAGCACT
CAACTCCGTGAACGCCCAGCTTTCAGGCCTAAGTGTCAGCTCTCTGAGCCCTGTTATAACAAACAACTTG
TATCCCAGTCTTCAGCCACAGAGGGATTTACTAGCATCAGAAGATATAGAAATACCCACCTTGTTTCCCC
AGAGGACCAGCCAAAACCTCGCCTCGAGTCACACATATGATAATTTTCACTCCAATTCAGTATTACTCCA
GCCAGTTAGCCTACACACCGCCACAGCAGCAGCAGCAGCAAACCAGAGGCTGCCACCCTTGCCAAGCAGT
CATCCAGTGCTAAAAGACGGCGATCTCCAGCCACCCAATTACTACGAGGTAATGGAGTTTGATCCCTTAG
CTCCCACTACAGAAGCTGTTTATGAAGAAATTGATGGTTACCACCAGAAAGAAGCTCAAAGTCATAGTGA
CTGCTAA

Translation (398 aa):
MAFGKSHRDPYATSVGHLIEKATFAGVLTEDWGQFLHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQ
LSLSLIDMCVQNCGPSFQSLIVKKEFIKDTLVKLLNPRYTLPLETQNRILNFIKIGKLHSELDMVKMNVK
VMTAILMENTPGSENHEDIELLRKLYKTGREMQERIMDLLVVVENEDVTMELIQVNEDLNNAVLGYERFT
RNQQRLLEQKRNRTEATRTSSEPSAPSCDLLDLSPIVPVPTPNEGALNSVNAQLSGLSVSSLSPVITNNL
YPSLQPQRDLLASEDIEIPTLFPQRTSQNLASSHTYDNFHSNSVLLQPVSLHTATAAAAANQRLPPLPSS
HPVLKDGDLQPPNYYEVMEFDPLAPTTEAVYEEIDGYHQKEAQSHSDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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