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Report for CCDS88253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88253.1 Public Mus musculus 11 Nt5c3b 23 108 98 CCDS HistoryNCBI Gene:68106Re-query CCDS DB by CCDS ID:88253.1Re-query CCDS DB by GeneID:68106See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88253.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092689.8 ENSMUSP00000090361.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092689.8Link to Ensembl Protein Viewer:ENSMUSP00000090361.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000092689Re-query CCDS DB by Protein ID:ENSMUSP00000090361
Original member Current member NCBI NM_001362967.1 NP_001349896.1 Accepted alive Link to Nucleotide Sequence:NM_001362967.1Link to Protein Sequence:NP_001349896.1Re-query CCDS DB by Nucleotide ID:NM_001362967Re-query CCDS DB by Protein ID:NP_001349896Link to BLAST:NP_001349896.1

Chromosomal Locations for CCDS 88253.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100429815 100429949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100431077 100431277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100432918 100433080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100434695 100434784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100436155 100436240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100440040 100440086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100440185 100440236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGACCCTGAGCAGATTTGCTTACAATGGACAGCGATGCCCTTCTTCCCACAATATTCTGGATAACAGCA
AAATTATCAGTGAGGATTGTCGCAAAGAGCTCACCGAGCTCTTTCACCACTATTATCCCATTGAGATCGA
CCCACACCGGACCATCAAAGAGAAGCTGCCTCACATGGTGCAGTGGTGGAGCAAAGCCCACAGTCTCCTG
TGCCAGCAGAGGATCCAGAAAGTCCAGATCGCTCAGGTGGTTGGAGAGTCCACTGCGATGCTCAGGGAGG
GCTATAAGACGTTCTTCGACACACTCTACCAGAACAACATCCCCCTTTTCATCTTCTCAGCGGGCATTGG
TGACATCCTGGAAGAAATTATCCGACAGATGAAAGTGTTCCACCCCAACATCCACATTGTGTCCAACTAC
ATGGACTTCAGTGAGGATGGATTCCTGAAAGGATTCAAGGGGCAGCTCATTCACACCTACAACAAGAACA
GCTCCGTGTGTGAGAACTCCAGCTACTTCCAGCAACTTCAGAACAAGACCAACATCATCCTGCTGGGAGA
CTCCATCGGGGACCTCACCATGGCTGATGGGGTCCCCGGGGTGCAGAACATTCTCAAGATCGGCTTCCTG
AATGACAAGGTGGAGGAGCGGCGGGAGCGTTACATGGACTCCTACGACATTGTGTTGGAGAAGGACGAGA
CGCTGGACGTGGTTAATGGGTTGCTGCGGCACATCCTTTACCAGGGGGACTGCGTGGAGCTCCAGGGCTC
TTAA

Translation (257 aa):
MTLSRFAYNGQRCPSSHNILDNSKIISEDCRKELTELFHHYYPIEIDPHRTIKEKLPHMVQWWSKAHSLL
CQQRIQKVQIAQVVGESTAMLREGYKTFFDTLYQNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNY
MDFSEDGFLKGFKGQLIHTYNKNSSVCENSSYFQQLQNKTNIILLGDSIGDLTMADGVPGVQNILKIGFL
NDKVEERRERYMDSYDIVLEKDETLDVVNGLLRHILYQGDCVELQGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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