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Report for CCDS88351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88351.1 Public Mus musculus 12 Six4 23 108 98 CCDS HistoryNCBI Gene:20474Re-query CCDS DB by CCDS ID:88351.1Re-query CCDS DB by GeneID:20474See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88351.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000175693.2 ENSMUSP00000135699.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175693.2Link to Ensembl Protein Viewer:ENSMUSP00000135699.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000175693Re-query CCDS DB by Protein ID:ENSMUSP00000135699
Original member NCBI NM_001362272.1 NP_001349201.1 Updated not alive Link to Nucleotide Sequence:NM_001362272.1Link to Protein Sequence:NP_001349201.1Re-query CCDS DB by Nucleotide ID:NM_001362272Re-query CCDS DB by Protein ID:NP_001349201
Current member NCBI NM_001362272.2 NP_001349201.1 Accepted alive Link to Nucleotide Sequence:NM_001362272.2Link to Protein Sequence:NP_001349201.1Re-query CCDS DB by Nucleotide ID:NM_001362272Re-query CCDS DB by Protein ID:NP_001349201Link to BLAST:NP_001349201.1

Chromosomal Locations for CCDS 88351.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 73108611 73109349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73112343 73113157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73113364 73113366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGATTGCAAGTGCGGCGGACATCAAGCAGGAGAATGGGATGGAAAGCGCCTCGGAAGGACAGGAGGCGC
ACCGAGAAGTGGCGGGGGGCGCGGCGGCTGGGCTGAGCCCCCCGGCTCCAGCTCCTTTCCCCCTGGAGCC
GGGGGACGCCGCGGCTGCCTCCAGGGTAAGCCGGGAGGAAGGGGCAGCGGCGGCGGGAGCGGCAGATCAG
GTACAACTCCACTCGGAACTTCTGGGCAGGCACCAGCACGCAGCCGCCGCGCAGCCCCCACTGGCCTTCT
CGCCGGACCATGTCGCCTGCGTGTGCGAGGCGTTGCAGCAGGGGGGCAACCTGGACCGCCTGGCCCGGTT
TCTTTGGTCCCTGCCCCAGAGCGATCTGCTACGTGGCAACGAGAGCCTTCTGAAGGCGCGAGCGCTCGTG
GCCTTCCACCAGGGCATCTACCCTGAGTTGTACAGCATCCTCGAGAGCCACAGCTTCGAGTCGGCCAACC
ATCCGCTGCTGCAGCAGCTCTGGTACAAGGCGCGCTACACCGAGGCCGAGCGAGCGCGCGGCCGGCCGCT
GGGCGCCGTGGACAAGTACCGGCTGCGCAGGAAATTCCCCTTGCCCCGCACCATCTGGGACGGCGAGGAG
ACGGTGTATTGTTTCAAGGAGAAGTCGCGCAACGCGCTCAAGGAGCTCTACAAGCAGAATCGCTACCCCT
CGCCGGCTGAGAAGCGGCACCTGGCCAAGATCACCGGCCTCTCCCTCACCCAGGTCAGCAACTGGTTCAA
GAACCGGCGGCAGCGTGACCGAAACCCCTCCGAGACCCAGTCCAAAAGCGAATCGGATGGCAACCCCAGT
ACCGAGGATGAATCCAGCAAGGGACATGAGGATTTGTCTCCTCATCCACTTTCAGGCGCATCTGATGGCG
TCACCAACCTCAGCCTCTCTAGCCACGTGGAGCCAGTATATATGCAACAAATTGGAAATGCTAAGATATC
ACTAAGCTCGTCTGGAGTTTTGTTGAATGGAAGCTTAGTACCTGCAAGTACTTCACCTGTCTTCCTTAAT
GGCAATTCTTTTATTCAGGGACACAATGGAGTTATCCTTAATGGACTGAATGTGGGAAATACACAGACAG
TGTCACTGAACCCACCCAAAATGTCTTCAAACATTGTGGGCAATGGCATAGCCATGACAGACATCCTGGG
ATCTACCTCCCAGGATGTGAAAGAATTCAAAGTCCTCCAGAGTTCTGCTGTGAACTCAGCAGCCACCACC
TCCTACAGCCCTAGTGCCCCTGTGTCATTCCCAGGGCTGATACCCTGCACTGAAGTGAAAAGAGAAGGCA
TTCAGACAGTGGCCTCCCAGGACGGTGGCTCTGTGGTGACTTTTACTACACCCGTGCAAATTAACCAGTA
TGGCATTGTCCAGATCCCTAATTCTGGAGCCAACGGCCAGTTCCTTAATGGGAGCATTGGATTCTCTCCA
CTGCAGCTGCCTCCTGTCTCAGTAGCAGCTTCACAAGGTAAAAGCTTCATTTGGTACCAGCAATGCACCA
GGGCATGTGTTGGTTAG

Translation (518 aa):
MIASAADIKQENGMESASEGQEAHREVAGGAAAGLSPPAPAPFPLEPGDAAAASRVSREEGAAAAGAADQ
VQLHSELLGRHQHAAAAQPPLAFSPDHVACVCEALQQGGNLDRLARFLWSLPQSDLLRGNESLLKARALV
AFHQGIYPELYSILESHSFESANHPLLQQLWYKARYTEAERARGRPLGAVDKYRLRRKFPLPRTIWDGEE
TVYCFKEKSRNALKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDRNPSETQSKSESDGNPS
TEDESSKGHEDLSPHPLSGASDGVTNLSLSSHVEPVYMQQIGNAKISLSSSGVLLNGSLVPASTSPVFLN
GNSFIQGHNGVILNGLNVGNTQTVSLNPPKMSSNIVGNGIAMTDILGSTSQDVKEFKVLQSSAVNSAATT
SYSPSAPVSFPGLIPCTEVKREGIQTVASQDGGSVVTFTTPVQINQYGIVQIPNSGANGQFLNGSIGFSP
LQLPPVSVAASQGKSFIWYQQCTRACVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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