NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88360.1 Public Mus musculus 12 Rad51b 23 108 98 CCDS HistoryNCBI Gene:19363Re-query CCDS DB by CCDS ID:88360.1Re-query CCDS DB by GeneID:19363See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171210.2 ENSMUSP00000128357.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171210.2Link to Ensembl Protein Viewer:ENSMUSP00000128357.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171210Re-query CCDS DB by Protein ID:ENSMUSP00000128357
Original member Current member EBI ENSMUST00000218039.2 ENSMUSP00000152105.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218039.2Link to Ensembl Protein Viewer:ENSMUSP00000152105.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218039Re-query CCDS DB by Protein ID:ENSMUSP00000152105
Original member Current member NCBI NM_009014.3 NP_033040.2 Accepted alive Link to Nucleotide Sequence:NM_009014.3Link to Protein Sequence:NP_033040.2Re-query CCDS DB by Nucleotide ID:NM_009014Re-query CCDS DB by Protein ID:NP_033040Link to BLAST:NP_033040.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033040.2 350 O35719-1 350 100% 0 0

Chromosomal Locations for CCDS 88360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 79300564 79300647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79302476 79302589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79303332 79303448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79314832 79314968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79324967 79325086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79327221 79327404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79657824 79657920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79767071 79767174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79803190 79803268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79813942 79813958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGAGCAGCAAGAAACTAAGACGAGTGGGTTTATCTCCAGAGCTGTGTGACCGTTTAAGCAGATACCAGA
TTGTTAACTGTCAGCACTTTTTAAGTCTCTCCCCACTAGAACTTATGAAAGTGACTGGCCTGAGTTACAG
AGGTGTCCACGAGCTTCTTCATACAGTAAGCAAGGCCTGTGCCCCGCAGATGCAAACGGCTTATGAGTTA
AAGACACGAAGGTCTGCACATCTCTCACCGGCATTCCTGTCTACTACCCTGTGCGCCTTGGATGAAGCAT
TGCACGGTGGTGTGCCTTGTGGATCTCTCACAGAGATTACAGGTCCACCAGGTTGCGGAAAAACTCAGTT
TTGCATAATGATGAGTGTCTTAGCTACATTACCTACCAGCCTGGGAGGATTAGAAGGGGCTGTGGTCTAC
ATCGACACAGAGTCTGCATTTACTGCTGAGAGACTGGTTGAGATTGCGGAATCTCGTTTTCCACAATATT
TTAACACTGAGGAAAAATTGCTTCTGACCAGCAGTAGAGTTCATCTTTGCCGAGAGCTCACCTGTGAGGG
GCTTCTACAAAGGCTTGAGTCTTTGGAGGAAGAGATCATTTCGAAAGGAGTTAAGCTTGTGATTGTTGAC
TCCATTGCTTCTGTGGTCAGAAAGGAGTTTGACCCGAAGCTTCAAGGCAACATCAAAGAAAGGAACAAGT
TCTTGGGCAAAGGAGCGTCCTTACTGAAGTACCTGGCAGGGGAGTTTTCAATCCCAGTTATCTTGACGAA
TCAAATTACGACCCATCTGAGTGGAGCCCTCCCTTCTCAAGCAGACCTGGTGTCTCCAGCTGATGATTTG
TCCCTGTCTGAAGGCACTTCTGGATCCAGCTGTTTGGTAGCTGCACTAGGAAACACATGGGGTCACTGTG
TGAACACCCGGCTGATTCTCCAGTACCTTGATTCAGAGAGAAGGCAGATTCTCATTGCCAAGTCTCCTCT
GGCTGCCTTCACCTCCTTTGTCTACACCATCAAGGGGGAAGGCCTGGTTCTTCAAGGCCACGAAAGACCA
TAG

Translation (350 aa):
MSSKKLRRVGLSPELCDRLSRYQIVNCQHFLSLSPLELMKVTGLSYRGVHELLHTVSKACAPQMQTAYEL
KTRRSAHLSPAFLSTTLCALDEALHGGVPCGSLTEITGPPGCGKTQFCIMMSVLATLPTSLGGLEGAVVY
IDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVHLCRELTCEGLLQRLESLEEEIISKGVKLVIVD
SIASVVRKEFDPKLQGNIKERNKFLGKGASLLKYLAGEFSIPVILTNQITTHLSGALPSQADLVSPADDL
SLSEGTSGSSCLVAALGNTWGHCVNTRLILQYLDSERRQILIAKSPLAAFTSFVYTIKGEGLVLQGHERP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH