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Report for CCDS88367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88367.1 Public Mus musculus 12 Dcaf4 23 108 98 CCDS HistoryNCBI Gene:73828Re-query CCDS DB by CCDS ID:88367.1Re-query CCDS DB by GeneID:73828See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88367.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000223291.1 ENSMUSP00000152717.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223291.1Link to Ensembl Protein Viewer:ENSMUSP00000152717.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223291Re-query CCDS DB by Protein ID:ENSMUSP00000152717
Original member Current member NCBI NM_001165256.1 NP_001158728.1 Accepted alive Link to Nucleotide Sequence:NM_001165256.1Link to Protein Sequence:NP_001158728.1Re-query CCDS DB by Nucleotide ID:NM_001165256Re-query CCDS DB by Protein ID:NP_001158728Link to BLAST:NP_001158728.1

Chromosomal Locations for CCDS 88367.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 83526113 83526240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83529168 83529268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83529977 83530134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83530824 83530906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83532279 83532381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83533867 83534010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83534860 83534909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83535900 83535979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83537713 83537814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83537944 83538041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83539308 83539481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83539789 83539903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83541365 83541627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGTCTGGCGTTCTGTGTTCCTCTCTCCTAGGAACGGACATGGATAGGAACATCTGGAAGAGTAGGAGAA
GACGCGGGCGAAGCCGACACCAGAGCCCTGCCCTGGGGCAGTGTGATTCCAGTGAGAGGTACGCCACAGG
GGCATCTCAGAGCTCACAAGATTCTGGCCACCATGATGCTGAGTCCCCGTCAACCTCGTCCAGCAGAACT
GGAGAGTCTTCAGTGCCAGAACTTCCAGGTTTTTACTTTGACCCTGAAAAGAACCGATACTTCCGTTTGC
TCCCGGGTCACAACAACTGCAACCCCCTCACAAAGGAGGGCATCCAGCAAAAGGAGATGGAGAGCAGGAG
GCTGCAGCTGCTGCAGCAAGAGGACATGCAGAAAAAGAAAATTACCAGAGTGGGATTTAATGCATCTTCC
ATCCTACGAAAAAACCAGCTGGGTTTTCTCAACTTCTCCAGTTATTGCCGTTTATCCCATGAGCTGCGGG
TGAGCTGCATGGAGAGGAAAAAGGTAGAGATTCAGAGCTCAGACCCTTCTGCTCTGGCAAGTGACCGGTT
TAACTTCATCATGGCAGACACTACCAGTGACCGCCTCTTCACAGTGAATGACGTCAAAATCGGAGGCTCC
AAGTACGGCATCATCAACCTGCAGGGTCTCAAGGCCCCCACGTTCGAGGTGCAGATGCATGAAAACCTGT
ACTTTACCAACAGGAAGGTGAACTCTGTGTGCTGGGCCTCACTCAATCACTTGGACTCCCACATACTGCT
GTGCCTCATGGGCCTTGCAGAGACGCCAGGCTGTGCCACCTTGCTCCCCGCTTCACTGTTTGTCAGTAAC
CACCAAGCAGGTACAGACCAGCCTGGCATGCTCTGTAGTTTCCGGATCCCTGGGGCCTGGTCCTGTGCCT
GGTCCTTGAACGTCCAGGCAAATAACTGCTTCAGTACAGGTTTGTCTCGGAGGGTCCTCTTGACCAATGT
GGTGACAGGACACCGGCAGTCATACAGGATCAACAGTGATGTCTTGGCCCAGCAGTTTGCAGTCAAGACT
CCTTTGCTGTTTAATGGCTGTCGTTCTGGGGAGATCTTTGCCATTGACCTGCGTTCTCCAAGTCAAGCCA
AGGGCTGGAAGGCTACCCAAATTTTCCATGACTCAGCCGTGACCTCTGTGCAGGTCTTCAAGGAGGAGCA
ACACCTGATGGCGTCAGACATGTCTGGAAAGATCAAGCTGTGGGACCTGAGGGCCACTAAATGTGTGAGA
CAGTATGAAGGTCATGTGAATGAGTACGCCTACCTGCCACTGCATATGCACGAGGAGGAAGGGATCCTGG
TGGCAGTGGGCCAAGACTGCTACACACGGATCTGGAGCCTCCACGATGCCCGCCTGCTCAGAACCATACC
CTCCCCATGCCCAACCTCCAAGGCCAACATTCCCAGTGTGGCCTTCTCTCCTCGGCTTGGGGGCTCCCGG
GGCGCCCCAGGGCTGCTCATGGCCGTCCAGCAGGACCTGTACTGTTTCGCCTACAGCTCGTCTTGTCCAG
ACAGTCAGGAGGAGGGCAGGTGGGAGCTCCCTTCTGTTTCCAATGAGGACATTTTATAA

Translation (532 aa):
MSGVLCSSLLGTDMDRNIWKSRRRRGRSRHQSPALGQCDSSERYATGASQSSQDSGHHDAESPSTSSSRT
GESSVPELPGFYFDPEKNRYFRLLPGHNNCNPLTKEGIQQKEMESRRLQLLQQEDMQKKKITRVGFNASS
ILRKNQLGFLNFSSYCRLSHELRVSCMERKKVEIQSSDPSALASDRFNFIMADTTSDRLFTVNDVKIGGS
KYGIINLQGLKAPTFEVQMHENLYFTNRKVNSVCWASLNHLDSHILLCLMGLAETPGCATLLPASLFVSN
HQAGTDQPGMLCSFRIPGAWSCAWSLNVQANNCFSTGLSRRVLLTNVVTGHRQSYRINSDVLAQQFAVKT
PLLFNGCRSGEIFAIDLRSPSQAKGWKATQIFHDSAVTSVQVFKEEQHLMASDMSGKIKLWDLRATKCVR
QYEGHVNEYAYLPLHMHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPCPTSKANIPSVAFSPRLGGSR
GAPGLLMAVQQDLYCFAYSSSCPDSQEEGRWELPSVSNEDIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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