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Report for CCDS88388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88388.1 Public Mus musculus 12 Rps6ka5 23 108 98 CCDS HistoryNCBI Gene:73086Re-query CCDS DB by CCDS ID:88388.1Re-query CCDS DB by GeneID:73086See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88388.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000222731.1 ENSMUSP00000152481.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222731.1Link to Ensembl Protein Viewer:ENSMUSP00000152481.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222731Re-query CCDS DB by Protein ID:ENSMUSP00000152481
Original member Current member NCBI NM_001330702.1 NP_001317631.1 Accepted alive Link to Nucleotide Sequence:NM_001330702.1Link to Protein Sequence:NP_001317631.1Re-query CCDS DB by Nucleotide ID:NM_001330702Re-query CCDS DB by Protein ID:NP_001317631Link to BLAST:NP_001317631.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317631.1 798 Q8C050-2 798 100% 0 0

Chromosomal Locations for CCDS 88388.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 100551444 100551683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100553001 100553164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100554274 100554433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100558449 100558640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100570829 100570999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100574431 100574524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100575123 100575256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100575635 100575760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100577722 100577883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100581296 100581446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100595815 100595918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100597890 100597973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100615997 100616104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100619526 100619641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100654271 100654489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100678518 100678589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100724781 100724880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2397 nt):
ATGGAGGGGGAGGGCGGCGGCAGCGGCGGCGCGGGCACCAGCGGGGACAGCGGCGACGGCGGCGAGCAGC
TCCTTACTGTCAAGCACGAGCTGCGGACCGCCAACTTAACAGGACACGCAGAGAAGGTGGGGATTGAAAA
CTTTGAGCTGCTGAAGGTCCTAGGAACTGGAGCTTATGGGAAAGTATTTCTAGTTCGTAAAATAAGCGGC
CATGATGCTGGAAAGCTGTATGCTATGAAGGTTTTAAAAAAGGCAACAATAGTTCAGAAGGCTAAAACTA
CAGAGCATACAAGGACAGAACGACAGGTTCTGGAGCACATTAGACAGTCGCCATTTTTGGTGACATTGCA
CTATGCTTTCCAGACAGAGACCAAGCTTCATCTCATCTTAGATTATATAAATGGTGGAGAACTTTTTACT
CATCTTTCTCAAAGAGAGCGTTTCACAGAGCACGAAGTGCAGATCTATGTTGGAGAGATTGTGCTTGCCC
TGGAACACCTGCACAAGTTGGGGATTATATACCGTGACATTAAGCTTGAAAATATTCTCCTGGATTCTAA
CGGCCATGTGGTGCTGACAGATTTCGGTCTGAGTAAGGAGTTTGTGGCCGATGAAACTGAAAGAGCATAT
TCTTTTTGTGGAACTATTGAATACATGGCTCCAGATATTGTCAGAGGGGGTGATTCGGGACACGACAAGG
CAGTTGACTGGTGGAGCTTAGGTGTTCTAATGTATGAGCTACTAACTGGAGCATCTCCTTTCACTGTCGA
TGGAGAAAAAAATTCCCAGGCTGAGATATCTAGGAGAATTTTAAAAAGTGAGCCTCCGTATCCCCAGGAA
ATGAGCACAGTAGCTAAAGACCTACTTCAGCGTCTCTTGATGAAAGATCCCAAGAAGCGATTGGGATGTG
GCCCACGGGATGCAGAAGAAATCAAAGAACATCTCTTCTTTGAGAAGATAAAGTGGGATGACTTAGCTGC
CAAAAAAGTGCCTGCGCCATTCAAGCCGGTGATCCGGGATGAGTTAGATGTGAGTAACTTCGCTGAAGAG
TTCACAGAGATGGACCCCACCTACTCTCCCGCTGCCTTGCCACAGAGCTCCGAGCGACTGTTTCAGGGCT
ATTCCTTCGTTGCTCCATCTATTCTCTTCAAGCGTAACGCAGCTGTCATAGATCCTCTTCAGTTCCATAT
GGGAGTTGACCGTCCTGGAGTGACAAATGTTGCCAGGAGTGCAATGATGAAGGACTCACCCTTCTATCAA
CACTATGACCTAGATCTGAAGGACAAACCTTTGGGAGAAGGAAGTTTTTCAATTTGTCGCAAGTGTGTAC
ACAAAAAAACTAACCAAGCATTTGCTGTCAAAATAATCAGCAAAAGGATGGAAGCCAATACTCAGAAAGA
AATAACAGCTCTGAAACTCTGCGAAGGACACCCCAATATTGTGAAACTACATGAAGTTTTTCACGATCAG
CTTCATACGTTTCTTGTGATGGAACTTCTGAATGGCGGAGAGCTGTTCGAGCGCATCAAGAGAAAGAAGC
ACTTCAGCGAGACTGAGGCCAGCTACATCATGCGGAAGCTTGTGTCAGCTGTGAGCCACATGCACGATGT
AGGAGTGGTGCACAGAGATCTGAAGCCTGAGAATCTGTTGTTCACTGATGAAAACGACAATTTGGAAATT
AAAGTGATTGACTTTGGGTTTGCACGCCTCAAGCCACCTGACAATCAGCCCCTCAAGACCCCGTGCTTCA
CCCTCCACTACGCAGCACCGGAGCTCTTGACGCACAATGGCTACGATGAGTCCTGTGACCTGTGGAGCTT
GGGTGTCATCCTGTATACAATGCTGTCAGGGCAGGTGCCATTCCAGTCTCATGACAGAAGTTTAACATGC
ACCAGTGCAGTGGAAATCATGAAGAAAATTAAAAAGGGAGACTTCTCCTTTGAAGGAGAAGCGTGGAAGA
ATGTATCCCAAGAGGCTAAAGATTTGATTCAAGGGCTTCTTACAGTTGATCCAAATAAAAGGCTGAAAAT
GTCTGGTTTGAGATACAATGAATGGCTTCAGGATGGCAGTCAGCTGTCCTCCAATCCTCTGATGACTCCA
GACATTCTGGGATCGTCAGGAGCAGCTGTGCACACCTGTGTGAAAGCAACCTTTCATGCCTTTAACAAGT
ATAAGAGAGAAGGATTTTGCCTGCAGAATGTGGATAAGGCCCCTTTGGCTAAGAGGAGGAAAATGAAGAG
GACCAGCACCAGCACAGAGACTCGCAGCAGCTCCAGCGAGAGCTCCCGCTCCTCCTCCTCCCAGTCCCAC
GGCAAGACAACGCCTACCAAGACGCTGCAGCCCAGCAATCCCACCGAAGGCAGTAACCCAGACACCCTCT
TCCAGTTCTCAGACTGA

Translation (798 aa):
MEGEGGGSGGAGTSGDSGDGGEQLLTVKHELRTANLTGHAEKVGIENFELLKVLGTGAYGKVFLVRKISG
HDAGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFT
HLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAY
SFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQE
MSTVAKDLLQRLLMKDPKKRLGCGPRDAEEIKEHLFFEKIKWDDLAAKKVPAPFKPVIRDELDVSNFAEE
FTEMDPTYSPAALPQSSERLFQGYSFVAPSILFKRNAAVIDPLQFHMGVDRPGVTNVARSAMMKDSPFYQ
HYDLDLKDKPLGEGSFSICRKCVHKKTNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQ
LHTFLVMELLNGGELFERIKRKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEI
KVIDFGFARLKPPDNQPLKTPCFTLHYAAPELLTHNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTC
TSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLSSNPLMTP
DILGSSGAAVHTCVKATFHAFNKYKREGFCLQNVDKAPLAKRRKMKRTSTSTETRSSSSESSRSSSSQSH
GKTTPTKTLQPSNPTEGSNPDTLFQFSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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