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Report for CCDS88458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88458.1 Public Mus musculus 13 Grk6 23 108 98 CCDS HistoryNCBI Gene:26385Re-query CCDS DB by CCDS ID:88458.1Re-query CCDS DB by GeneID:26385See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225925.1 ENSMUSP00000153668.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225925.1Link to Ensembl Protein Viewer:ENSMUSP00000153668.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225925Re-query CCDS DB by Protein ID:ENSMUSP00000153668
Original member Current member NCBI NM_001286065.1 NP_001272994.1 Accepted alive Link to Nucleotide Sequence:NM_001286065.1Link to Protein Sequence:NP_001272994.1Re-query CCDS DB by Nucleotide ID:NM_001286065Re-query CCDS DB by Protein ID:NP_001272994Link to BLAST:NP_001272994.1

Chromosomal Locations for CCDS 88458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55445509 55445560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55449308 55449403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55450265 55450377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55450507 55450584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55450928 55451028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55451329 55451421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55451520 55451583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55451703 55451843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55452237 55452325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55453047 55453084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55453172 55453261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55454317 55454525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55454606 55454743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55458793 55458930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55459013 55459147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55459784 55459837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1629 nt):
ATGGAGCTCGAGAACATCGTAGCGAACACGGTGCTACTCAAGGCCCGGGAAGGTGGTGGCGGGAATCGCA
AAGGCAAGAGCAAGAAATGGCGCCAGATGCTGCAGTTCCCCCATATCAGCCAGTGTGAGGAGCTTCGACT
CAGCCTTGAGCGTGACTACCACAGCCTATGTGAGCGCCAGCCCATTGGGCGCCTGTTATTTCGTGAGTTC
TGTGCTACGAGACCTGAGCTGACCCGGTGTACTGCCTTCCTGGATGGGGTGTCTGAATATGAGGTGACCC
CTGATGAGAAGCGGAAAGCATGTGGGCGCCGACTAATGCAGAACTTTCTGAGCCACACGGGTCCTGACCT
CATCCCTGAAGTTCCACGGCAGCTGGTGAGTAACTGTGCCCAGCGGCTAGAGCAGGGACCCTGCAAAGAC
CTCTTCCAGGAGCTGACCCGGCTGACCCACGAGTACCTGAGCACGGCCCCTTTTGCCGACTACCTCGACA
GCATCTACTTCAACCGTTTTCTGCAGTGGAAGTGGCTGGAAAGGCAACCAGTGACCAAAAACACCTTCAG
GCAGTACCGAGTCCTGGGCAAAGGTGGCTTTGGGGAGGTATGTGCCTGCCAGGTGCGGGCAACAGGCAAG
ATGTACGCATGCAAGAAACTGGAAAAGAAGCGGATAAAGAAGCGAAAGGGGGAGGCCATGGCTCTCAACG
AGAAACAGATCTTGGAGAAAGTGAACAGTAGGTTTGTAGCTGGCTTTCCTGAAGCACGTGCTGTCTTCTA
TGCTGCTGAGATCTGCTGTGGCCTGGAAGACCTGCACCGGGAACGCATTGTGTACAGGGATCTAAAGCCA
GAGAATATCCTTCTGGATGACCATGGCCACATTCGGATCTCGGACCTGGGACTGGCCGTGCATGTGCCTG
AGGGCCAGACCATCAAAGGCCGTGTGGGCACTGTGGGCTACATGGCTCCAGAGGTGGTGAGGAATGAGCG
CTACACGTTCAGTCCTGACTGGTGGGCGCTAGGCTGCCTCCTGTACGAGATGATCGCAGGTCAGTCGCCC
TTCCAGCAGAGGAAGAAGAAGATAAAGCGCGAAGAGGTGGAGCGGCTGGTCAAGGAAGTGGCCGAGGAGT
ACACAGACCGCTTTTCCTCACAGGCGCGCTCACTCTGTTCTCAGCTTCTTAGCAAGGACCCTGCTGAGCG
CCTGGGGTGTCGTGGAGGTGGCGCCCGTGAGGTAAAGGAGCACCCCCTTTTCAAGAAACTGAATTTCAAG
CGGCTGGGAGCTGGCATGCTAGAGCCACCTTTTAAGCCTGATCCCCAGGCTATTTATTGCAAGGATGTCC
TGGACATTGAACAGTTCTCTACAGTTAAAGGTGTGGATCTGGAGCCCACAGACCAAGACTTCTACCAGAA
GTTTGCCACAGGCAGTGTGTCCATCCCCTGGCAGAATGAGATGGTGGAGACCGAGTGCTTCCAGGAACTC
AATGTCTTTGGGCTGGATGGGTCTGTTCCCCCAGACCTGGACTGGAAGGGCCAGCCCACTGCACCCCCCA
AGAAGGGATTGCTACAGAGACTCTTCAGTCGCCAAGATTGCTGTGGGAACTGCAGCGACAGTGAGGAAGA
GCTCCCCACCCGCCTCTAG

Translation (542 aa):
MELENIVANTVLLKAREGGGGNRKGKSKKWRQMLQFPHISQCEELRLSLERDYHSLCERQPIGRLLFREF
CATRPELTRCTAFLDGVSEYEVTPDEKRKACGRRLMQNFLSHTGPDLIPEVPRQLVSNCAQRLEQGPCKD
LFQELTRLTHEYLSTAPFADYLDSIYFNRFLQWKWLERQPVTKNTFRQYRVLGKGGFGEVCACQVRATGK
MYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKP
ENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVRNERYTFSPDWWALGCLLYEMIAGQSP
FQQRKKKIKREEVERLVKEVAEEYTDRFSSQARSLCSQLLSKDPAERLGCRGGGAREVKEHPLFKKLNFK
RLGAGMLEPPFKPDPQAIYCKDVLDIEQFSTVKGVDLEPTDQDFYQKFATGSVSIPWQNEMVETECFQEL
NVFGLDGSVPPDLDWKGQPTAPPKKGLLQRLFSRQDCCGNCSDSEEELPTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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