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Report for CCDS88519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88519.1 Public Mus musculus 13 Ipo11 23 108 98 CCDS HistoryNCBI Gene:76582Re-query CCDS DB by CCDS ID:88519.1Re-query CCDS DB by GeneID:76582See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000186033.6 ENSMUSP00000140046.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186033.6Link to Ensembl Protein Viewer:ENSMUSP00000140046.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186033Re-query CCDS DB by Protein ID:ENSMUSP00000140046
Original member Current member NCBI NM_001360897.1 NP_001347826.1 Accepted alive Link to Nucleotide Sequence:NM_001360897.1Link to Protein Sequence:NP_001347826.1Re-query CCDS DB by Nucleotide ID:NM_001360897Re-query CCDS DB by Protein ID:NP_001347826Link to BLAST:NP_001347826.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347826.1 984 Q8K2V6-2 984 100% 0 0

Chromosomal Locations for CCDS 88519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 106795631 106795795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106812208 106812292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106822956 106823051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106842089 106842210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106847346 106847459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106848241 106848336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106856738 106856818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106857229 106857308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106857499 106857525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106860861 106860937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106865865 106865980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106870675 106870788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106875491 106875607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106876239 106876279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106876935 106876968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106879613 106879739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106882842 106882947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106883526 106883573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106886667 106886757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106889363 106889406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106891616 106891768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106892423 106892615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106895805 106895875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106897216 106897264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106898919 106898977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106900685 106900817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106910200 106910403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106910744 106910816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106919524 106919624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 106925013 106925150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2955 nt):
ATGGATCTCAATAGTGCCAGCTCTGTGGTTCTTCAGGTCCTAACACAGGCCACCAGTCAGGATACTGCTG
TGTTGAAGCCAGCCGAGGAGCAGCTGAAACAGTGGGAGACACAGCCAGGTTTCTATTCAGTGTTGCTGAA
TATTTTTACGAATCACACCCTTGATATAAATGTACGGTGGCTTGCTGTGCTGTATTTTAAACATGGGATT
GATCGTTACTGGAGGCGTGTCGCACCGCATGCTCTCTCAGAAGAGGAAAAGTCAACATTGCGTGCAGGGC
TCATCACCAACTTTAATGAACCAATAAACCAGATTGCGACCCAGATCGCAGTGCTGATTGCCAAGGTTGC
TCGGTTAGACTGTCCTAGGCAGTGGCCGGAGCTCATTCCCACTCTTGTAGAGTCTGTCAAAGTCCAGGAT
GACCTTCGCCAGCACAGAGCTCTGCTGACCTTCTACCATGTCACCAAGACGCTGGCATCCAAACGCCTGG
CCGCTGACAGAAAGCTATTCTATGATTTAGCTTCTGGAATTTATAATTTTGCCTGTTCTCTGTGGAACCA
TCATACAGACACATTTCTGCAGCACGTTTCTTCTGGCAATGAAGCTGCGGTTCTGAGTTCACTAGAGCGA
ACACTGCTATCGTTAAAAGTGCTGCGGAAGTTAACTGTGAATGGATTTGTGGAACCTCATAAGAATATGG
AGGTGATGGGTTTTTTACATGGAATATTTGAACGTCTAAAACAGTTTCTGGAGTGCAGCAGAAGTATAGG
TACAGATAATGTGTGTCGAGATAGACTGGAAAAGACCATCATTCTTTTTACTAAAGTGCTCTTGGACTTC
TTGGATCAACACCCCATTTCATTTACTCCTCTAATTCAGAGGTCACTGGAATTTTCTGTAAGCTATGTTT
TTACTGAAGTTGGTGAAGGCGTTACATTTGAGCGATTCATTGTCCAGTGCATGAATCTTATTAAGATGAT
TGTCAAAAATTATGCTTATAAGCCATCCAAAAATTTTGAAGATAGCAGCCCTGAAACACTTGAAGCCCAT
AAGATTAAGATGGCATTCTTCACATATCCCACGTTGACAGAGATATGTCGACGATTAGTCTCTCATTATT
TTTTATTAACGGAAGAAGAACTGACCATGTGGGAGGAAGATCCAGAAGGCTTTACAGTGGAAGAAACAGG
AGGAGACTCTTGGAAATACAGTTTGAGGCCTTGCACTGAAGTATTATTTATAGATATATTCCACGAATAT
AATCAAACTCTTACTCCTGTACTTCTAGAAATGATGCAAACTCTTGAAGGTCCAACCAATGTAGAAGATA
TGAATGCACTGTTAATCAAAGATGCTGTGTATAATGCTGTGGGATTAGCTGCTTTTGAGCTGTTTGACAG
TGTTGATTTTGATCAGTGGTTTAAAACCCAACTTCTTCCCGAATTACAAGTTTCTCATAATAGGTATAAG
CCATTACGACGCAGGGTGATTTGGCTCATTGGTCAGTGGATTTCTGTGAAATTCAAGTCTGACTTGAGAC
CCATGCTGTATGAAGCAATCTGTAACTTGCTTCAAGATCAGGATTTAGTGGTCCGAATTGAAACAGCAAC
AACTCTGAAGTTAACTGTTGATGATTTTGAATTTAGGACAGATCAGTTTTTACCGTATCTGGAAACCATG
TTCACACTGCTTTTCCAGTTGCTGCAGCAGGTTACAGAGTGTGATACAAAGATGCACGTGCTGCACGTCC
TCTCCTGTGTGATCGAAAGAGTCAACGTGCAGATCCGACCATATGTGGGGTGTTTGGTACAGTATTTGCC
TCTTCTCTGGAAGCAGAGCGAAGAACACAACATGCTGCGATGCGCTATTCTGACAACACTTATCCACCTT
GTTCAGGGATTAGGAGCAGACAGCAAGAACCTGTACCCTTTCCTGCTCCCAGTTATCCAGCTGAGTACAG
ATGTGTCTCAGCCTCCACATGTCTATCTTCTGGAAGATGGCCTGGAGTTATGGTTAGTGACATTGGAGAA
CAGCCCATGTGTCACACCAGAGCTGCTTCGTATATTTCAGAACATGTCACCTCTTCTTGAGCTTCCATCC
AGCTGCCTTGCAAACGAATTAAGTTCAGAGAATCTCAGAACCTGCTTTAAGATCATCAATGGCTATATCT
TTTTATCATCAACAGAATTTTTACAGACATATGCAGCAGGTTTGTGCCAGTCCTTTTATGAGCTGCTACC
AGAGATTACTACAGAAGGTCAAGTTCAAGTGCTGAAGGTTGTGGAAAATGCCCTTAAAGTGAATCCAGTA
TTAGGCCCACAGATGTTTCAGCGAATTCTACCCTGTGTTTTCAGAGGTGTTATTGAAGGCGAGAGGTATC
CAGTAGTGATGTCCATTTATCTTGCTGTCATGGGTCGAGTCTTACTCCAGAATACCAGCTTCTTTTCTTC
ACTTCTTAATGAGATGGGACACGAGTTTAATCAGGAGATGGACCAGCTTTTAGGAAATGTGATTGAAATG
TGGGTCGATCGAATGGACAACATCACACAGCCCGAAAGAAAGAAACTCTCAGCTTTGGCTTTGCTTTCTC
TTCTGCCTTCTGATAATAGTGTTATCCAAGATAAATTTTGTGGAATTATAAATATCTCAGTGGAGGCTCT
TCATGATGTCATGACAGAAGACCCTGAAACAAGAACTTACAAAGATTGTATGTTGATGTCTCAACACGAG
GAACCGAAAGTAACAGAAGATGAAGAGCCACCCACAGAACAAGACAAGAGGAAAAAGATGCTGGCCCTGA
AGGACCCGGTGCACACAGTGTCTCTGCAGCAGTTCATCTATGAGAAGCTCAAGGCGCAGCAGGAGATCCT
GGGGGAGCAAGGCTTCCAGTCCCTCATGGAAACGGTGGACACAGAGATTGTCACCCAGCTGCAGGAGTTT
TTGCAAGGATTCTAA

Translation (984 aa):
MDLNSASSVVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVRWLAVLYFKHGI
DRYWRRVAPHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLVESVKVQD
DLRQHRALLTFYHVTKTLASKRLAADRKLFYDLASGIYNFACSLWNHHTDTFLQHVSSGNEAAVLSSLER
TLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRDRLEKTIILFTKVLLDF
LDQHPISFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAH
KIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEY
NQTLTPVLLEMMQTLEGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKTQLLPELQVSHNRYK
PLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLETM
FTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHL
VQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCVTPELLRIFQNMSPLLELPS
SCLANELSSENLRTCFKIINGYIFLSSTEFLQTYAAGLCQSFYELLPEITTEGQVQVLKVVENALKVNPV
LGPQMFQRILPCVFRGVIEGERYPVVMSIYLAVMGRVLLQNTSFFSSLLNEMGHEFNQEMDQLLGNVIEM
WVDRMDNITQPERKKLSALALLSLLPSDNSVIQDKFCGIINISVEALHDVMTEDPETRTYKDCMLMSQHE
EPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQEILGEQGFQSLMETVDTEIVTQLQEF
LQGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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