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Report for CCDS88678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88678.1 Public Mus musculus 14 Cdadc1 23 108 98 CCDS HistoryNCBI Gene:71891Re-query CCDS DB by CCDS ID:88678.1Re-query CCDS DB by GeneID:71891See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167100.8 ENSMUSP00000128022.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167100.8Link to Ensembl Protein Viewer:ENSMUSP00000128022.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167100Re-query CCDS DB by Protein ID:ENSMUSP00000128022
Original member Current member NCBI NM_001168538.1 NP_001162010.1 Accepted alive Link to Nucleotide Sequence:NM_001168538.1Link to Protein Sequence:NP_001162010.1Re-query CCDS DB by Nucleotide ID:NM_001168538Re-query CCDS DB by Protein ID:NP_001162010Link to BLAST:NP_001162010.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162010.1 497 Q8BMD5-3 497 100% 0 0

Chromosomal Locations for CCDS 88678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 59560937 59560956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59568948 59569008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59573647 59573836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59575734 59575903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59581325 59581374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59586039 59586608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59589788 59589965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59592461 59592535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59596862 59596959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59597755 59597836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGAAAGAAACGGATCAGATGCAGAGTTTGGAGGGTTCCGGGGCCGAGAGGTCAGTCGGCACGCAGACGG
GCAGCATGACGGGTCAAATACCAAGGCTTTCTAAAGTGAACCTTTTCACCCTGCTCAGTCTCTGGATGGA
GCTCTTCCCAGGAGTGGAAGCCCAAGGGCAAAAATCTCAGAAAACTGAAGAGGAAAGCCGTGGTCCCTTA
GGAGACAATGAAGAGTTGACCAGAGTGTCTACTGAAAAAAAACAGGTGAAGAAAACTGGTCTTGTGGTGG
TGAAAAACATGAAGATCATTGGTCTTCACTGCTCCAGTGAAGACTTACATACTGGGCAAATTGCTCTCAT
TAAGCATGGGTCCAGGCTGAAAAACTGTGATCTTTATTTTTCAAGAAAACCATGTTCTGCTTGTTTGAAA
ATGATAGTGAATGCTGGAGTTAACCGAATTTCTTACTGGCCTTCTGACCCAGAAATAAGTTTGCTCACTG
AAGCTTCTAGTTCTGAAGATGCAAAGCTAGATGCCAAAGCCGCAGAAAGATTGAAGTCAAACAGCCGGGC
CCATGTGTGTGTCTTACTCCAGCCGTTGGTGTGTTACATGGTGCAGTTTGTGGAGGAAACCTCTTACAAA
TGTGACTTTATTCAGAAAACTGCAAAAGCGTTGCCGGGTGCTGACACTGATTTTTATTCTGAATGTAAAC
AAGAAAGAATAAAAGAGTATGAAATGTTATTTTTGGTTTCAAATGAAGAAAGGCATAAGCAGATACTGAT
GACTATAGGTCTGGAGAGCCTGTGTGAAGACCCCTATTTTAGCAATCTAAGGCAAAACATGAAAGACCTG
ATTCTACTTTTGGCCACAGTAGCTTCTAGTGTGCCCAACTTGAAACACTTCGGATTCTACTGTAGCAGCC
CAGAGCAGATTAATGAAATTCACAATCAGAGTTTGCCACAGGAAGTTGCAAGGCATTGCATGGTGCAGGC
CAGGTTATTGGCATATCGAACTGAGGATCATAAAACAGGAGTTGGAGCTGTCATTTGGGCAGAAGCGAAA
TCTAGAAGCTGCGATGGGACTGGAGCCATGTACTTCATAGGGTGCGGGTACAATGCCTTTCCCGTGGGCT
CTGAGTATGCCGACTTCCCGCACATGGATGACAAGCATAAGGACAGAGAAATACGGAAGTTCAGATACAT
CATACATGCGGAGCAGAACGCTTTGACATTTAGATGTCAAGATATAAAACCAGAAGAACGCAGCATGATT
TTTGTGACAAAATGCCCCTGTGATGAATGTGTGCCTTTAATTAAAGGTGCAGGCATAAAGCAGATCTATG
CTGGTGACGTAGATGTTGGAAAGAAGAAAGCAGACATCTCGTACATGAAGTTTGGGGAGCTTGAGGGTGT
TCGCAAATTCACATGGCAGTTGAATCCGTCTGAAGCTTATAGTCTTGACCCAAATGAGCCTGAAAGGAGA
GAAAGTTTCTTCTTTATGCCCTGA

Translation (497 aa):
MKETDQMQSLEGSGAERSVGTQTGSMTGQIPRLSKVNLFTLLSLWMELFPGVEAQGQKSQKTEEESRGPL
GDNEELTRVSTEKKQVKKTGLVVVKNMKIIGLHCSSEDLHTGQIALIKHGSRLKNCDLYFSRKPCSACLK
MIVNAGVNRISYWPSDPEISLLTEASSSEDAKLDAKAAERLKSNSRAHVCVLLQPLVCYMVQFVEETSYK
CDFIQKTAKALPGADTDFYSECKQERIKEYEMLFLVSNEERHKQILMTIGLESLCEDPYFSNLRQNMKDL
ILLLATVASSVPNLKHFGFYCSSPEQINEIHNQSLPQEVARHCMVQARLLAYRTEDHKTGVGAVIWAEAK
SRSCDGTGAMYFIGCGYNAFPVGSEYADFPHMDDKHKDREIRKFRYIIHAEQNALTFRCQDIKPEERSMI
FVTKCPCDECVPLIKGAGIKQIYAGDVDVGKKKADISYMKFGELEGVRKFTWQLNPSEAYSLDPNEPERR
ESFFFMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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