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Report for CCDS88794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88794.1 Public Mus musculus 15 1110038F14Rik 23 108 98 CCDS HistoryNCBI Gene:117171Re-query CCDS DB by CCDS ID:88794.1Re-query CCDS DB by GeneID:117171See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88794.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000230274.1 ENSMUSP00000154907.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230274.1Link to Ensembl Protein Viewer:ENSMUSP00000154907.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230274Re-query CCDS DB by Protein ID:ENSMUSP00000154907
Original member Current member NCBI NM_054099.3 NP_473440.1 Accepted alive Link to Nucleotide Sequence:NM_054099.3Link to Protein Sequence:NP_473440.1Re-query CCDS DB by Nucleotide ID:NM_054099Re-query CCDS DB by Protein ID:NP_473440Link to BLAST:NP_473440.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473440.1 160 Q3U6N9-3 160 100% 0 0

Chromosomal Locations for CCDS 88794.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76948809 76948919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76949068 76949152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76949544 76949690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76950249 76950388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGAAGCAAAAGAAAAAGAAAACCCCCAACAGGGTCTCTGGGACAAATGGAAGCGAAAAGCCCTCGGAGA
AACCTGCCCCGGACGAAGCTCCTCCTAGCGCTGAGGCCCAGGCGGAACAGCTGGCGCGGGAGCTGGCCTG
GTGTGTGGAACAGCTGGAGCTGGGTCTCAAGACGCAGAGACCTACCCCGAAGCAGAAAGAGCAGGCTGTT
GGGGCAATCCGAACGCTGCGCAGTGAAAAAACCCCCTTGCCCCGGAAGAGACAGCTGATGCGCTCCTTGT
TTGGGGACTACAGGGCTCAGATGGATGCAGAGTGGCGGGAGGCCCTACGGGCTCTAAAGGCTGCCACCCA
TTCGGCCCAGGTACAGCTCGTCAGTGAGGCCACCAGAAAGAAGAGCGGAAGGGTCTGCAGGCCTCGTCCT
GCAGAAAGAGCCAAAACCACTCCGGACTTGACCAGCGAAGAGTTTCGGTTCAATTTCTTTTAG

Translation (160 aa):
MKQKKKKTPNRVSGTNGSEKPSEKPAPDEAPPSAEAQAEQLARELAWCVEQLELGLKTQRPTPKQKEQAV
GAIRTLRSEKTPLPRKRQLMRSLFGDYRAQMDAEWREALRALKAATHSAQVQLVSEATRKKSGRVCRPRP
AERAKTTPDLTSEEFRFNFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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