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Report for CCDS88845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88845.1 Public Mus musculus 15 Letmd1 23 108 98 CCDS HistoryNCBI Gene:68614Re-query CCDS DB by CCDS ID:88845.1Re-query CCDS DB by GeneID:68614See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88845.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000230294.1 ENSMUSP00000155807.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230294.1Link to Ensembl Protein Viewer:ENSMUSP00000155807.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230294Re-query CCDS DB by Protein ID:ENSMUSP00000155807
Original member Current member NCBI NM_001357982.1 NP_001344911.1 Accepted alive Link to Nucleotide Sequence:NM_001357982.1Link to Protein Sequence:NP_001344911.1Re-query CCDS DB by Nucleotide ID:NM_001357982Re-query CCDS DB by Protein ID:NP_001344911Link to BLAST:NP_001344911.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344911.1 203 Q924L1-3 203 100% 0 0

Chromosomal Locations for CCDS 88845.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 100472630 100472631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100475023 100475209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100475306 100475407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100475502 100475654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100476790 100476886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100477776 100477846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGTACCTGTTTCCTAGGCAACTGCTAGTCAAGCATTTCTGGACCCCCAAACAACAAATTGATTTCTTGG
ACGTTTATCATGGTCTCCGGAGGCGGTCCCACTCGGAAGTCATCACACATCTAAGAAGGGCCAGCACTTT
TGTTTCTCATGAGAAACTCCGGAGGCAGCTGACAGACCTGTGCACCAAGGTGCAGAGTGGCACCCACCCA
GCAGCACAGGACGTCCTGGCTCTCAGAGATTGCTTCTCTACCTACCCCTTGGGCTTCAGCCAGCTCCAAG
CCTCGCAGATGAGAGCCTTGAGCCAGGCCATGCTCCTCACACCTTACCTGCCCCCGCCCTTGCTGAGGCA
GCGGCTAAAGAGTCACACCACCGTGATCCACCAGCTGGACAGGGCTCTGGCAAAGCTGGGGATTGGCCAG
CTGACTGCACAGGAAGTGAAATCGGCTTGCTATCTTCGTGGCTTGAACTCTACCCACATTGCTGACGACA
GGTGTCGAGCCTGGCTGGGGGAATGGTTGCACATCTCCTGTAGCCTGAAAGAACCCGAGCTGTCCCTCTT
GCTGCACAACGTGGTCCTGCTCTCCACCAACTACCTTGAGACAAGGCGCTGA

Translation (203 aa):
MYLFPRQLLVKHFWTPKQQIDFLDVYHGLRRRSHSEVITHLRRASTFVSHEKLRRQLTDLCTKVQSGTHP
AAQDVLALRDCFSTYPLGFSQLQASQMRALSQAMLLTPYLPPPLLRQRLKSHTTVIHQLDRALAKLGIGQ
LTAQEVKSACYLRGLNSTHIADDRCRAWLGEWLHISCSLKEPELSLLLHNVVLLSTNYLETRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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