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Report for CCDS88852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88852.1 Public Mus musculus 15 Tns2 23 108 98 CCDS HistoryNCBI Gene:209039Re-query CCDS DB by CCDS ID:88852.1Re-query CCDS DB by GeneID:209039See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 88852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046144.9 ENSMUSP00000041087.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046144.9Link to Ensembl Protein Viewer:ENSMUSP00000041087.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000046144Re-query CCDS DB by Protein ID:ENSMUSP00000041087
Original member NCBI NM_001355636.1 NP_001342565.1 Updated not alive Link to Nucleotide Sequence:NM_001355636.1Link to Protein Sequence:NP_001342565.1Re-query CCDS DB by Nucleotide ID:NM_001355636Re-query CCDS DB by Protein ID:NP_001342565
Current member NCBI NM_001355636.2 NP_001342565.1 Accepted alive Link to Nucleotide Sequence:NM_001355636.2Link to Protein Sequence:NP_001342565.1Re-query CCDS DB by Nucleotide ID:NM_001355636Re-query CCDS DB by Protein ID:NP_001342565Link to BLAST:NP_001342565.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342565.1 1407 Q8CGB6-3 1407 100% 0 0

Chromosomal Locations for CCDS 88852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102103087 102103161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102104530 102104638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102105339 102105376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102106244 102106282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102106591 102106629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102106789 102106838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102107015 102107186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102107482 102107532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102107802 102107924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102108011 102108075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102108855 102108938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102109321 102109433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102109513 102109573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102109700 102109775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102110471 102110600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102110679 102110744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102110871 102110984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102111082 102112293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102112408 102112576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102112667 102113232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102113336 102113425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102113710 102113835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102114041 102114133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102114261 102114338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102114471 102114548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102114990 102115158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102115561 102115629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102115737 102115766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102115858 102115996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4224 nt):
ATGAAGTCCAGCGGCCCTGTGGAAAGGTTGCTCAGAGCCCTGGGGAGGAGGGACAGCAGCCGGGCCACCA
GC
AGGCCGAGGAAAGCAGAACCACACAGCTTCCGGGAGAAGGTTTTCCGGAAGAAAACTCCAGTGTGTGC
A
GTGTGTAAGGTGACCATCGATGGGACCGGTGTCTCCTGCCGAGTCTGCAAGGTGGCCACACACAGAAAA
TGT
GAAGCAAAGGTGACTTCATCCTGTCAGGCCTTGCCCCCTGCGGAGCTGCGGAGAAGCACAGCCCCGG
TC
CGGCGCATAGAACACCTGGGGTCCACCAAGTCTCTGAACCACTCAAAGCAACGCAGTACTCTACCCAG
G
AGCTTCAGCCTAGATCCGCTCATGGAGCGTCGCTGGGACTTGGACCTCACCTATGTAACGGAGCGGATC
TTG
GCCGCAGCTTTTCCTGCACGACCGGACGAGCAGCGACACCGAGGCCACTTGCGCGAGCTAGCCCATG
TG
CTTCAATCCAAGCACAGAGACAAGTACCTGCTCTTCAACCTTTCAGAGAAACGGCATGACCTCACCCG
C
CTGAACCCCAAGGTGCAAGACTTTGGTTGGCCTGAACTACATGCCCCACCTCTGGACAAGTTGTGTTCC
ATC
TGCAAAGCCATGGAGACGTGGCTCAGTGCCGACCCTCAGCACGTGGTTGTGTTGTACTGCAAGGGGA
GC
AAAGGCAAGCTTGGGGTCATCGTCTCTGCTTATATGCACTACAGCAAGATCTCTGCAGGGGCAGACCA
G
GCGCTGGCAACCCTCACCATGAGGAAATTCTGTGAGGACAAGGTGGCCACGGAACTGCAGCCCTCCCAG
CGC
CGCTATGTCAGCTACTTCAGCGGACTGCTGTCTGGCTCCATCAGAATGAACAGCAGCCCACTCTTCC
TG
CACTATGTGTTTGTTCCTGTGCTGCCAGCCTTTGAGCCCAACACAGGCTTCCAGCCCTTCCTCAAGAT
C
TACCAGTCTATGCAGCTGGTCTACACATCTGGAGTCTACCGCATAGCAGGTCCAGGGCCTCAGCAACTT
TGT
ATCAGCCTGGAGCCAGCCCTTCTCCTCAAAGGCGACGTCATGGTAACCTGCTACCACAAGGGTGGCC
AG
GGGACAGACCGGACCCTCGTGTTCCGAGTTCAGTTCCACACATGCACCATTCATGGATCACGGCTCAC
C
TTCCCAAAGGACCAACTAGATGAGGCCTGGGCTGATGAGCGGTTTCCTTTCCAAGCCTCAGTGGAGTTT
GTT
TTCTCCTCCAGCCCTGAGAAGGTCAAAGGCAACACCCCACGGAATGATCCCTCTGTCTCCGTGGATT
AC
AACACGACAGAGCCTGCTGTACGCTGGGACTCCTATGAAAACTTCAATCAGCACCATGAGGATAGCGT
G
GACGGCGCCTTGGCCCACACAAGGGGCCCCCTGGATGGCAGTCCTTATGCCCAGGTGCAGCGGGTCCCC
CGC
CAGACACCACCAGCACCTTCTCCAGAGCTTCCCCCACCCCCGATGCTCTCTGTCAGCAGCGACTCTG
GC
CACTCATCCACGCTAACCACAGAACACACAGCAGAATCCCCCGGCCGGCCGCCCCCAACTGCTGCTGA
A
AGACAGGAGCTGGATCGTCTGCTGGGAGGTTGTGGAGTGGCCAGTGCGGGCCGTGGTGCTGGGCGAGAG
ACC
GCCATCCTTGATGATGAAGAGCAGCCCTCTGTGGGTGGAGGCCTGCACCTTGGGATGTATTCAGGCC
AC
AGGCCTGGACTCAGTCGACGCTGCTCCTGCCGTCAGGGCTTCCGGGAGCCTTGTGGGGTCCCTAATGG
G
AGCTACTACCGGCCTGAGGGAACCCTAGAGAGACGACGACCACCCTATGGGGGCTATGAGGGACACCCC
CAG
GGCTACGCAGAAGCCTCTGTGGAGAAGAGACGCCTCTGCAGGTCACTGTCAGAAGGGCCGTACCCCT
AT
GCACCCGAGCTGGGGAAACCAGCCAATGGGGACTTTGGCTACCGTCCAGCAGGCTACCGGGAGGTGGT
G
ATCCTGGAGGACCCTGGGGTGCCTGCTTTATGCTCATGCCCTGCCTGTGAAGAGAAGCTGGCACTGCCC
ACC
GCAGCCCTGTATGGACTGCGACTAGAGAGGGAGGCTGCAGAGGGGTGGTCCAGCGAGGTAGGCAAGC
CT
CTCCTGCACCCAGTGAGGCCTGGACACCCATTGCCTCTGCTGGTGCCTGCCTGTGGGCATCATCATGC
C
CCAATGCCTGACTATGGCTGCCTGAAGCCACCCAAGGTGGGTGAGGAAGGGCATGAGGGCTGCTCCTAT
GCC
GTGTGCTCTGAAGGCAGGTATGGGCATTCAGGGTACCCTGCCCTGGTAACCTATGGCTATGGAGGAG
CG
GTTCCCAGCTACTGCCCAGCATATGGCCGGGCACCTCACAGTTGCGGATCTCCAAGTGAAGGCCGAGG
G
TACCCCAGCCCTGGTGCCCACTCACCACGGGCTGGATCTGTGTCCCCGGGGAGTCCACCCTACCTGCAG
CCC
AGGAAGCTGGGTTATGAGATTTCTGCGGAGGATGGGAGAGACAAGTACCCACTTTCTGGACACCTGG
CC
TCAACAGGACCCTTGGCTTCTACAGAGCTCTTCCCTCCCGTCTCAGAGTCACCTGAACCATCCTGGAG
G
GATGGCTCCAGTGGACACAGCACGCTACCTCGGTCTCCCCGAGATCCTCAGTGCAGTGCTTCTTCAGAG
CTG
TCTGGTCCCTCCACACCCTTACACACCAGCAGCCCAGTTCAGGGCAAGGAAAGCAACCGACGGCAAG
AC
ACCACCAGGTCTCCCTCCTTGGCACCCACTCAGAGACTGAGTCCTGGCGAGGCCTTGCCCTCTGTTGT
A
CAGGGAGTTGCTGAAAAGACTCCTGAGCTGTTGACAAGCAGCAGGCCTGAGCAACTGGACCCTAGCCCC
TTC
TCCCAGACCTCTGCACCCGGCTCACCCAATGGCTGGCCTCAGGAAAGGAGCCCAGGAGGCCACACCA
AC
AGTGCTAGTCCTCGGAGCCCTGTGCCAACCACCCTGCCTGGACTTCGCCATGCCCCGTGGCAGGGCCC
T
CGGGGCACTTCAGATAGCCCAGATGGCTCCCCTCTTACTCCTGTGCCTACCCAGATGCCCTGGCTTGTG
GGC
AGCCCAGAACCACCCCAGAGCTCACCCACCCCTGCCTTCCCCCTGGCTACCTCCTATGATGCCAATG
GT
CCCATTCAGCCTCCACTTCCTGAAAAACGACACCTGCCTGGGTCTGGGCAACAGCCGTCGCCACCAGC
C
AGAAGCACCAATCAACATGTCACCTTTGCATCTCCTCTCCCAGATGTCACCCAACCCCCAGAACACCCT
TTA
CAAGAGAACCAAAGCAATGTCAAGTTTGTCCAGGATACATCAAAGTTCTGGTACAAGCCACATCTTT
CC
CGAGACCAAGCCATTGCCCTGCTGAAAGACAAGGATCCTGGGGCCTTCCTGATTAGAGACAGCCATTC
A
TTCCAAGGAGCCTATGGGCTAGCCCTCAAGGTGGCTACACCTCCACCCAGTGCGCAGCCCTGGAAAGGG
GAC
CCCTCAGAACAGCTGGTCCGCCATTTCCTCATCGAGACTGGGCCCAAAGGCGTGAAGATCAAGGGTT
GT
CCCACTGAGCCCTATTTTGGAAGCCTGTCTGCCCTGGTCTCCCAGCACTCCATCTCTCCCATCTCCCT
G
CCCTGCTGTCTGAGAATTCCTAGCAAAGATCCTCTAGAAGAAACCCCAGAGGCCCCAGTGCCTACCAAC
ATG
AGCACAGCAGCAGACCTCCTGCGTCAAGGAGCAGCCTGCAGTGTGCTCTACCTGACCTCGGTGGAGA
CA
GAGTCATTGACTGGCCCTCAGGCTGTGGCCAAGGCCAGCTCTGCAGCTCTGAGCTGCAGCCCGGTCCC
A
GTGCCAGCCATTGTCCATTTCAAGGTCTCAGCTCAAGGCATCACACTGACAGACAACCAGAGAAAGCTC
TTC
TTTCGCCGCCATTACCCAGTGAACAGCATCACCTTCTCTAGCACTGACCCCCAGGACCGCAGATGGA
CC
AACCCAGATGGAGCCACCTCCAAGATCTTTGGTTTCGTGGCCAAGAAGCCAGGAAGTCCCTGGGAAAA
T
GTGTGTCACCTCTTTGCGGAGCTTGACCCGGACCAACCGGCAAGTGCCATTGTCACCTTCATCACCAAA
GTT
CTACTGGGCCAGAGGAAATGA


Translation (1407 aa):
MKSSGPVERLLRALGRRDSSRATSRPRKAEPHSFREKVFRKKTPVCAVCKVTIDGTGVSCRVCKVATHRK
C
EAK
VTSSCQALPPAELRRSTAPVRRIEHLGSTKSLNHSKQRSTLPRSFSLDPLMERRWDLDLTYVTERI
L
AAAFPARPDEQRHRGHLRELAHVLQSKHRDKYL
LFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDKLCS
I
CKAMETWLSADPQHVVVLYCK
GSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVATELQPSQ
R
RYVSYFSGLLSGSIRMNSSPLFLHYVFVPVLPAFEPNTGFQPFLKIYQSMQLVYTSGVYRIAGPGPQQL
C
ISLEPALLLKGDVM
VTCYHKGGQGTDRTLVFRVQFHTCTIHGSRLTFPKDQLDEAWADERFPFQASVEF
V
FSSSPEKVK
GNTPRNDPSVSVDYNTTEPAVRWDSYENFNQHHEDSVDGALAHTRGPLDGSPYAQVQRVP
R
QTPPAPSPELPPPPMLSVSSDSGHSSTLTTEHTAESPGRPPPTAAERQELDRLLGGCGVASAGRGAGRE
T
AILDDEEQPSVGGGLHLGMYSGHRPGLSRRCSCRQGFREPCGVPNGSYYRPEGTLERRRPPYGGYEGHP
Q
GYAEASVEKRRLCRSLSEGPYPYAPELGKPANGDFGYRPAGYREVVILEDPGVPALCSCPACEEKLALP
T
AALYGLRLEREAAEGWSSEVGKPLLHPVRPGHPLPLLVPACGHHHAPMPDYGCLKPPKVGEEGHEGCSY
A
VCSEGRYGHSGYPALVTYGYGGAVPSYCPAYGRAPHSCGSPSEGRGYPSPGAHSPRAGSVSPGSPPYLQ
P
RKLGYEISAEDGRDKYPLSGHLASTGPLAST
ELFPPVSESPEPSWRDGSSGHSTLPRSPRDPQCSASSE
L
SGPSTPLHTSSPVQGKE
SNRRQDTTRSPSLAPTQRLSPGEALPSVVQGVAEKTPELLTSSRPEQLDPSP
F
SQTSAPGSPNGWPQERSPGGHTNSASPRSPVPTTLPGLRHAPWQGPRGTSDSPDGSPLTPVPTQMPWLV
G
SPEPPQSSPTPAFPLATSYDANGPIQPPLPEKRHLPGSGQQPSPPARSTNQHVTFASPLPDVTQPP
EHP
L
QENQSNVKFVQDTSKFWYKPHLSRDQ
AIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKG
D
PSEQLVRHFLIETGPKGVKIKGCPTEPYF
GSLSALVSQHSISPISLPCCLRIPSKDPLEETPEAPVPTN
M
STAADLLRQGA
ACSVLYLTSVETESLTGPQAVAKASSAALSCSPVPVPAIVHFKVSAQGITLTDNQRKL
F
FRRHYPVNSITFSSTDPQDR
RWTNPDGATSKIFGFVAKKPGSPWENVCHLFAELDPDQPASAIVTFITK
V
LLGQRK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser