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Report for CCDS88868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88868.1 Public Mus musculus 16 Mgrn1 23 108 98 CCDS HistoryNCBI Gene:17237Re-query CCDS DB by CCDS ID:88868.1Re-query CCDS DB by GeneID:17237See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88868.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000230990.1 ENSMUSP00000155425.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230990.1Link to Ensembl Protein Viewer:ENSMUSP00000155425.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230990Re-query CCDS DB by Protein ID:ENSMUSP00000155425
Original member Current member NCBI NM_001357062.1 NP_001343991.1 Accepted alive Link to Nucleotide Sequence:NM_001357062.1Link to Protein Sequence:NP_001343991.1Re-query CCDS DB by Nucleotide ID:NM_001357062Re-query CCDS DB by Protein ID:NP_001343991Link to BLAST:NP_001343991.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343991.1 554 Q9D074-4 554 100% 0 0

Chromosomal Locations for CCDS 88868.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4886386 4886473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4907368 4907486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4910720 4910808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4911322 4911468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4913690 4913807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4915753 4915819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4916105 4916154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4918866 4918913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4920313 4920381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4922594 4922753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4924423 4924532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4926309 4926374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4927675 4927901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4930691 4930814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4931113 4931155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4932200 4932298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4934195 4934235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGGGCTCCATCCTGAGTCGCCGCATCGCGGGCGTAGAGGACATCGACATACAGGCCAACTCGGCCTATC
GCTACCCTCCGAAGTCCGGAAACTACTTTGCTTCGCATTTTTTCATGGGAGGAGAGAAATTTGACACTCC
CCATCCTGAAGGTTACCTCTTTGGAGAGAACATGGACCTGAACTTCCTGGGCAGTCGTCCAGTCCAGTTT
CCCTATGTCACCCCTGCCCCCCATGAGCCAGTGAAGACACTGAGGAGCCTGGTGAACATTCGCAAAGACT
CTCTCCGGCTTGTGAGGTACAAAGAAGACGCAGACAGCCCCACGGAGGACGGTGAAAAGCCCCGCGTGCT
CTACAGTCTGGAATTCACCTTTGATGCCGATGCCCGTGTGGCTATCACCATCTATTGTCAGGCGGTAGAG
GAGCTGGTGAATGGCGTGGCAGTGTACAGCTGTAAGAACCCTTCTCTGCAATCTGAGACCGTCCACTACA
AGAGAGGCGTTAGCCAGCAGTTCTCCCTGCCTTCTTTCAAGATTGACTTCTCCGAGTGGAAGGATGATGA
GCTGAACTTTGACCTGGACCGGGGTGTGTTTCCAGTAGTCATCCAGGCTGTGGTGGACGAAGGGGATGTT
GTGGAAGTGACTGGCCACGCTCATGTGCTCCTGGCTGCCTTTGAGAAGCATGTGGATGGCAGCTTCTCCG
TGAAGCCATTAAAGCAGAAGCAAATTGTGGACCGGGTCAGCTACCTGCTGCAGGAGATCTACGGCATCGA
GAACAAGAACAACCAGGAGACTAAGCCTTCTGATGATGAGAACAGTGACAACAGCAGTGAGTGTGTGGTG
TGCCTGTCAGACCTGCGGGACACACTGATCCTGCCCTGCCGACACCTGTGCCTCTGCACTTCCTGTGCTG
ACACACTGCGGTACCAGGCCAACAACTGCCCCATCTGCCGGCTGCCGTTCCGAGCCCTTCTGCAGATCCG
GGCTGTGCGGAAGAAGCCAGGGGCCCTGTCTCCCATCTCCTTCAGCCCTGTCTTGGCCCAAAGTGTGGAC
CACGATGAGCACTCTTGTCCCTTTAAAAAATCAAAGTCGCACCCTGCCTCCCTGGCCAGCAAGAAACCTA
AAAGGGAAACAAGTTCTGACAGTATCCCACCTGGCTATGAGCCCATCTCCTTGCTTGAGGCACTCAATGG
TCTACGAGCTGTCTCCCCGGCTATCCCATCAGCTCCCCTCTATGAGGAAATCACCTACTCAGGCATCTCG
GACGGTCTTTCCCAGGCCAGTTGTCCCCTTGCTGGACTTGATCGAATCATGGAAAGTGGCCTACAGAAGG
GCAAGACACAGAGCAAGTCTCCAGACAGCACCCTGCGGTCTCCATCATTCCCCATCCATGAGGAGGACGA
GGAGAAGCTCTCAGAGGACTCGGATGCTCCTCTCCCACCGAGCGGTGTGGAGCTGGTACTGCGGGAGAGC
AGCTCCCCTGAGAGTTTCGGAACAGAGGAGGGAGATGAGCCGTCCCTAAAGCAAGGGAGCCGAGTACCCT
CTATTGATGATGTCCTGCAAGATGGCAGTCCGCAGCATCATGGTTGCAGCCAGCCAGTCCCTCCTGCTGA
CATCTACCTACCAGCCCTGGGTCCTGAGTCGTGCTCTGTTGGTATAGAGGAGTAA

Translation (554 aa):
MGSILSRRIAGVEDIDIQANSAYRYPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDLNFLGSRPVQF
PYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKEDADSPTEDGEKPRVLYSLEFTFDADARVAITIYCQAVE
ELVNGVAVYSCKNPSLQSETVHYKRGVSQQFSLPSFKIDFSEWKDDELNFDLDRGVFPVVIQAVVDEGDV
VEVTGHAHVLLAAFEKHVDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSSECVV
CLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPISFSPVLAQSVD
HDEHSCPFKKSKSHPASLASKKPKRETSSDSIPPGYEPISLLEALNGLRAVSPAIPSAPLYEEITYSGIS
DGLSQASCPLAGLDRIMESGLQKGKTQSKSPDSTLRSPSFPIHEEDEEKLSEDSDAPLPPSGVELVLRES
SSPESFGTEEGDEPSLKQGSRVPSIDDVLQDGSPQHHGCSQPVPPADIYLPALGPESCSVGIEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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