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Report for CCDS89036.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89036.1 Public Mus musculus 17 Ilrun 23 108 98 CCDS HistoryNCBI Gene:224647Re-query CCDS DB by CCDS ID:89036.1Re-query CCDS DB by GeneID:224647See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89036.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000233508.1 ENSMUSP00000156684.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233508.1Link to Ensembl Protein Viewer:ENSMUSP00000156684.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233508Re-query CCDS DB by Protein ID:ENSMUSP00000156684
Original member Current member NCBI NM_001271511.1 NP_001258440.1 Accepted alive Link to Nucleotide Sequence:NM_001271511.1Link to Protein Sequence:NP_001258440.1Re-query CCDS DB by Nucleotide ID:NM_001271511Re-query CCDS DB by Protein ID:NP_001258440Link to BLAST:NP_001258440.1

Chromosomal Locations for CCDS 89036.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 27753790 27753995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27786071 27786268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27793909 27794063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27820177 27820334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGAGGGCATGGACGTGGACTTGGATCCGGAGCTCATGCAGAAGTTCAGCTGCCTGGGCACCACAGACA
AGGACGTGCTCATCTCCGAGTTCCAGCGGCTACTCGGCTTCCAGCTCAACCCGGCCGGCTGCGCCTTCTT
CCTGGACATGACCAACTGGAACTTACAAGCAGCGATTGGCGCCTATTATGACTTCGAGAGCCCAAATATC
AGTGTGCCCTCCATGTCCTTTGTTGAAGATGTCACCATAGGAGAAGGGGAGTCAATACCCCCTGATACCC
AGTTCATAAAAACTTGGCGGATACAGAATTCTGGAGCAGAGGCCTGGCCTCCAGGGGTTTGTCTTAAATA
TGTCGGGGGAGACCAGTTTGGACATGTGAACATGGTGATGGTGAGATCACTAGAGCCCCAAGAGATCGCA
GACGTCAGCGTCCAGATGTGCAGTCCCAGCAGAGCAGGCATGTACCAGGGACAGTGGCGGATGTGCACTG
CTACTGGACTCTACTATGGAGGGGCTCCACGGGCCTTACCCCTTCGGCCAGTCTTAAACGGGTGTCAGCA
AGAAGAAAAACTAACAAAAGACAGAAGGCCTGACTTTGGGGGGAGAGGGCAAGGGGTTCCTCTGGATTGC
AGACCACATCGCACGGACCCCTGGCTCAGACCCCCACCTACCCCCCAATCACAGAAGAAGAGGAAGAAAG
AGACTAGTTTTGAGTGA

Translation (238 aa):
MEGMDVDLDPELMQKFSCLGTTDKDVLISEFQRLLGFQLNPAGCAFFLDMTNWNLQAAIGAYYDFESPNI
SVPSMSFVEDVTIGEGESIPPDTQFIKTWRIQNSGAEAWPPGVCLKYVGGDQFGHVNMVMVRSLEPQEIA
DVSVQMCSPSRAGMYQGQWRMCTATGLYYGGAPRALPLRPVLNGCQQEEKLTKDRRPDFGGRGQGVPLDC
RPHRTDPWLRPPPTPQSQKKRKKETSFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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