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Report for CCDS89107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89107.1 Public Mus musculus 17 Ppp2r5d 23 108 98 CCDS HistoryNCBI Gene:21770Re-query CCDS DB by CCDS ID:89107.1Re-query CCDS DB by GeneID:21770See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89107.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000233988.1 ENSMUSP00000156500.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233988.1Link to Ensembl Protein Viewer:ENSMUSP00000156500.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233988Re-query CCDS DB by Protein ID:ENSMUSP00000156500
Original member Current member NCBI NM_001357684.1 NP_001344613.1 Accepted alive Link to Nucleotide Sequence:NM_001357684.1Link to Protein Sequence:NP_001344613.1Re-query CCDS DB by Nucleotide ID:NM_001357684Re-query CCDS DB by Protein ID:NP_001344613Link to BLAST:NP_001344613.1

Chromosomal Locations for CCDS 89107.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46683989 46684126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46684261 46684377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46684506 46684578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46684665 46684766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46685302 46685429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46685519 46685689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46686054 46686107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46686263 46686431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46686559 46686689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46687034 46687126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46687250 46687360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46687446 46687645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46687837 46688029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46700069 46700149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46704833 46704859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1788 nt):
ATGTCCTATAAACTGAAGAAGGATAAGCAGGAACCCTCCAAGCTTGCCAAAGGCACAGCCAAGCCCAGCA
GCTCAAGCAAGGATGGTGGAGGGGAGAACACCGATGAGGCCCAGCCCCAGCCCCAGTCTCAGTCACCATC
ATCCAACAAGCGACCCAGCAACAGTACACCACCCCCAACACAACTCAGCAAAATCAAGTACTCAGGGGGA
CCCCAGATTGTCAAGAAAGAACGACGCCAAAGCTCCTTCCCCTTCAACCTCAACAAGAACCGGGAGCTAC
AAAAACTTCCTGCCTTGAAAGACTCACCAACCCAGGAACGTGAGGAGCTGTTTATCCAGAAGCTACGCCA
GTGCTGTGTCCTCTTTGACTTCGTGTCAGACCCACTCAGTGACCTCAAATGCAAAGAGGTGAAGCGGGCA
GGACTCAATGAGATGGTGGAGTATATCACCCACAGCCGTGATGTTGTCACTGAGGCCATCTACCCTGAGG
CTGTCACCATGTTTTCAGTGAATCTCTTCCGGACGCTGCCTCCTTCATCGAATCCCACAGGAGCAGAGTT
TGACCCTGAGGAAGATGAGCCAACCTTGGAAGCTGCCTGGCCGCATCTCCAGCTCGTGTACGAGTTTTTC
TTACGTTTCTTGGAGTCTCCAGATTTCCAGCCAAATATAGCCAAGAAGTACATTGACCAGAAGTTTGTAC
TTGCTCTCCTGGACCTATTCGATAGTGAAGACCCTAGAGAGCGGGATTTTCTCAAGACCATTTTGCATCG
CATCTATGGCAAGTTTTTGGGGCTCCGGGCTTATATTCGTAGGCAGATCAACCACATCTTCTACAGGTTT
ATCTATGAGACTGAGCATCACAATGGGATTGCGGAGCTGCTGGAGATCCTGGGCAGCATCATCAATGGCT
TTGCCTTGCCCCTTAAGGAAGAACACAAGGTGTTTCTCGTCCGTGTCCTGCTTCCACTTCACAAAGTCAA
GTCTCTGAGTGTATACCACCCTCAGTTGGCGTACTGTGTGGTGCAGTTCCTGGAGAAGGAGAGCAGTCTC
ACTGAGCCGGTGATTGTGGGACTTCTCAAGTTTTGGCCTAAGACCCACAGCCCCAAGGAGGTGATGTTTC
TGAACGAGCTGGAGGAGATTCTAGATGTCATTGAACCCTCGGAGTTCAGTAAAGTCATGGAGCCGCTCTT
CCGCCAGCTTGCCAAATGTGTTTCCAGCCCCCATTTCCAGGTGGCGGAGCGCGCCCTCTACTACTGGAAC
AATGAGTACATCATGAGCCTCATCAGCGACAATGCTGCCCGCATCCTCCCCATCATGTTTCCTGCACTCT
ATAGGAACTCCAAAAGCCACTGGAACAAGACAATCCATGGACTCATCTACAATGCCCTGAAGCTCTTCAT
GGAGATGAACCAGAAGCTGTTTGACGACTGCACACAGCAGTACAAGGCGGAGAAGCAGAAGGGCAGGTTC
CGAATGAAGGAGAGAGAGGAGATGTGGCAGAAGATCGAGGAGCTGGCCCGGCTCAATCCCCAGTACCCTA
TGTTTCGGGCTCCTCCGCCACTGCCCCCTGTGTACTCCATGGAGACAGAGACGCCCACAGCAGAGGACAT
TCAGCTCCTGAAGAGGACGGTGGAGACAGAGGCCGTGCAGATGCTGAAGGACATCAAGAAGGACAAAGTG
CTGCTCCGGAGGAAGTCAGAGCTGCCACAGGACGTGTACACCATCAAGGCACTAGAGGCGCACAAGCGGG
CAGAAGAGTTCCTGACTGCCAGCCAGGAGGCCCTCTGA

Translation (595 aa):
MSYKLKKDKQEPSKLAKGTAKPSSSSKDGGGENTDEAQPQPQSQSPSSNKRPSNSTPPPTQLSKIKYSGG
PQIVKKERRQSSFPFNLNKNRELQKLPALKDSPTQEREELFIQKLRQCCVLFDFVSDPLSDLKCKEVKRA
GLNEMVEYITHSRDVVTEAIYPEAVTMFSVNLFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFF
LRFLESPDFQPNIAKKYIDQKFVLALLDLFDSEDPRERDFLKTILHRIYGKFLGLRAYIRRQINHIFYRF
IYETEHHNGIAELLEILGSIINGFALPLKEEHKVFLVRVLLPLHKVKSLSVYHPQLAYCVVQFLEKESSL
TEPVIVGLLKFWPKTHSPKEVMFLNELEEILDVIEPSEFSKVMEPLFRQLAKCVSSPHFQVAERALYYWN
NEYIMSLISDNAARILPIMFPALYRNSKSHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQYKAEKQKGRF
RMKEREEMWQKIEELARLNPQYPMFRAPPPLPPVYSMETETPTAEDIQLLKRTVETEAVQMLKDIKKDKV
LLRRKSELPQDVYTIKALEAHKRAEEFLTASQEAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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