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Report for CCDS89243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89243.1 Public Mus musculus 18 Gramd2b 23 108 98 CCDS HistoryNCBI Gene:107022Re-query CCDS DB by CCDS ID:89243.1Re-query CCDS DB by GeneID:107022See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89243.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000237422.1 ENSMUSP00000157609.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237422.1Link to Ensembl Protein Viewer:ENSMUSP00000157609.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237422Re-query CCDS DB by Protein ID:ENSMUSP00000157609
Original member Current member NCBI NM_001360917.1 NP_001347846.1 Accepted alive Link to Nucleotide Sequence:NM_001360917.1Link to Protein Sequence:NP_001347846.1Re-query CCDS DB by Nucleotide ID:NM_001360917Re-query CCDS DB by Protein ID:NP_001347846Link to BLAST:NP_001347846.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347846.1 445 Q6PEM6 445 100% 0 0

Chromosomal Locations for CCDS 89243.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 56400454 56400575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56469533 56469652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56474019 56474130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56476603 56476669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56478849 56478952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56482621 56482716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56485212 56485283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56485376 56485456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56488751 56488862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56489615 56489737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56490671 56490758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56491895 56491999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56497320 56497413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56502588 56502629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGTGAAGAAACGGCTTTCCTCCAGTGACAATGTGTTCAAGTTCGAGATCCCCAGCAACTCGAAGACCA
GTGCTGAGGCCCCACACAGCTCCACTGACAGCCCAAGCTCCGTGTTTCTCAGCTCAGAGGCTGAGAATGG
TGCGGAGGACAGAAGGAGGGTCAGCAAGTCGCCAACAGCCCAATCTCCTACCTCATCTGTGGAGGCCGAG
TCCCCGGACCAGAAGAGGAGCCTTGGCCTGTGGTCAAAATCCAGTTTTGATGGTTCCAGTTTGTTGAGTG
ATAAGAATGACTGTAAAACTGAAAGCAAGACTGACTCTAAGACCGAAAGAAAAAAGTCTTCATCGTCTAG
TCAGTACAAGGCGAACATGCACTTTCACAAGTTATTCCTGGATGTCCCAACTGAGGAGCCACTGAGGCAA
AGCTTTACCTGTGCTCTTCAGAAAGAAATTCTGTACCAAGGAAAGCTCTTTGTGTCGGAAAACTGGATTT
GTTTTCATTCCAAGGTCTTTGGAAAAGACACTAAGATCTCCATTCCAGCTTTCTCGGTAACCTTGATCAA
GAAAACCAAAACTGCCCTTCTGGTGCCAAACGCCCTGATCATCGCGACGGTCACAGACAGGTACATATTC
GTTTCCTTGCTGTCCAGAGACTCAACCTACAAACTGATAAAATCTGTGTGCGGACACTTAGAGAACACAA
GTGTTGGTAACAGTCCCAACCCATCTTCTGCTGAAAACAGTTTCCGGGCAGATCGCCCTTCGTCTCTGCC
TCTGGATTTCAATGATGAATTCTCAGACCTGGACGGAGTGGTTCGACAACGAAGGCAAGACTTGGAAGGA
TACAGCAGCTCAGGATCCCAGACTCCGGAATCTGAGAACTCCCGAGACTTCCACGTGACCGAATCTCAGA
CAGTTCTGAATGTCACAAAGGGAGAAACAAAACCACCTCGGACAGATGCCCACGGGAGCAGAGCACCTGA
TGGAAAAGCCAAGATCCTGCCTGCCCATGGTCAATCAGAAACTATTGGAATTTTACATAAAATGGAGTCT
CGGAAGTGCCCGACTCTCCATCACATCCTGATAGTCTATGCAATTATTGTCTGTGCCCTGATCATCTCCA
CCTTCTACATGAGATACAGGATTAACACTCTGGAGGAGCGCCTGGGGACCCTGACGTCCATCATGGATCC
CCACAGTACTGAGCAGACAGCCCCATCCGGCCTGGGATCACAAATGCAGTTAAATGTGGAGGTCCTCTGC
CAAGAACTTACAGCTAACATAGTGAAATTGGAAAAGATACAAAACAACTTACAAAAGCTGCTTGAGAATG
GTGACTGA

Translation (445 aa):
MVKKRLSSSDNVFKFEIPSNSKTSAEAPHSSTDSPSSVFLSSEAENGAEDRRRVSKSPTAQSPTSSVEAE
SPDQKRSLGLWSKSSFDGSSLLSDKNDCKTESKTDSKTERKKSSSSSQYKANMHFHKLFLDVPTEEPLRQ
SFTCALQKEILYQGKLFVSENWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIF
VSLLSRDSTYKLIKSVCGHLENTSVGNSPNPSSAENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDLEG
YSSSGSQTPESENSRDFHVTESQTVLNVTKGETKPPRTDAHGSRAPDGKAKILPAHGQSETIGILHKMES
RKCPTLHHILIVYAIIVCALIISTFYMRYRINTLEERLGTLTSIMDPHSTEQTAPSGLGSQMQLNVEVLC
QELTANIVKLEKIQNNLQKLLENGD


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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