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Report for CCDS89289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89289.1 Public Mus musculus 18 Sall3 23 108 98 CCDS HistoryNCBI Gene:20689Re-query CCDS DB by CCDS ID:89289.1Re-query CCDS DB by GeneID:20689See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89289.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238808.1 ENSMUSP00000158909.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238808.1Link to Ensembl Protein Viewer:ENSMUSP00000158909.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238808Re-query CCDS DB by Protein ID:ENSMUSP00000158909
Original member Current member NCBI NM_001369133.1 NP_001356062.1 Accepted alive Link to Nucleotide Sequence:NM_001369133.1Link to Protein Sequence:NP_001356062.1Re-query CCDS DB by Nucleotide ID:NM_001369133Re-query CCDS DB by Protein ID:NP_001356062Link to BLAST:NP_001356062.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356062.1 1320 Q62255-1 1320 99.9242% 0 1

Chromosomal Locations for CCDS 89289.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 80969473 80969904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80971181 80974629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80986455 80986536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3963 nt):
ATGTCTCGGCGCAAGCAGGCCAAGCCCCAGCATCTCAAGTCGGACGAGGAGCTACCGCCGCAGGACGGGG
CTTCGGAGCACGGCGTCCCGGGGGACGGTGCGGAGGACGCAGACAGCGGCAGCGAGAGCAGGAGCGGCAG
CGAGGAAACCAGCGTGTGTGAGAAGTGCTGTGCAGAGTTCTTCAAGTGGGCGGACTTCCTGCAGCACAAG
AAGACCTGCACCAAGAACCCACTGGTGCTGATCGTGCACGACGATGAGCCGGCGCCGCCCTCTGAGGACT
TTCCAGAACCTTCTCCCGCCAGCTCGCCCAGTGACCGCACTGAGAGTGAGGTGGCTGAGGAGGTGGCGCC
CACGGAGGGCAGCGAGGTGAAGGCTGCTACAAAGGAGGCGGAGCCCATGGATGTGGAGGTATCTACGGAC
AAGGGCCCTCCAGGCCCAAGTGTACCCCCACCGCCGCCTGCACTGCCGCCACAGCCAGAGCCTGCGGCCT
TCAGCATGCCTAGTACCAATGTGACCCTGGAGACGCTGCTCAGCACCAAGGTGGCCGTGGCACAGTTCTC
ACAGGGTGCACGTGCGGGCGGCACCACAGGCGCTGGTGGCAGCGTGGGCGCGGTGGCCATCCCCATGATC
CTGGAGCAGCTGGTGGCGCTGCAGCAGCAGCAGATCCACCAACTTCAGCTCATCGAGCAGATCCGCAGCC
AGGTGGCCCTGATGAGCCGGCAGCCTGGGCCTCCATTGAAGCCCTCAGCCAGTGCCCCTGGAACAGCCTC
AGTACAGCTTCAGGGTCTGACTCCCCATGCGGCCCTCCAGCTTTCTGCTGGCCCTGCCACTGCCTCTGCT
GGCTCGGGCTCCACGCTGCCGGCAGCCTTCGATGGCCCCCAGCACCTGTCACAGCCTGCATCCGGCACAA
GCACTCCCTGCAGCACCAGTGCTGCCCCCCCTGATTCTGGGGCACACCCAGCCTGTAGCACTGGCCCAGC
TCCAGGAGCCGTGGCCGCTGCATCCAGCACTGTAGGCAACGCGGTGCAGCCCCAAAATGCATCCACGCCC
CCTGCCCTGGGTCCTGGACCCCTCCTCAGCTCAGCCTCCAATCTGCCAAACCCTCTGCTACCTCAGACTT
CATCCAGCAGTGTCATCTTCCCCAACCCGCTGGTTAGCATTGCTGCCACCGCCAATGCCCTGGATCCCCT
GTCGGCTCTGATGAAGCACCGCAAGGGCAAGCCCCCTAATGTTTCAGTGTTCGAGCCCAAGGCCAGTGCC
GAGGACCCTTTCTTTAAGCACAAGTGCAGGTTCTGTGCCAAGGTCTTCGGCAGTGACAGTGCGTTGCAGA
TCCACCTACGATCCCACACAGGGGAGCGGCCCTTCAAATGTAACATCTGCGGGAACCGCTTTTCCACCAA
GGGCAACCTGAAGGTCCACTTTCAGAGGCACAAGGAGAAGTACCCCCACATCCAGATGAACCCCTACCCT
GTCCCAGAATACCTCGACAATGTGCCCACCTGCTCTGGGATCCCCTATGGCATGTCCCTGCCCCCAGAAA
AGCCGGTGACCACCTGGCTGGACAGCAAGCCAGTGCTGCCCACTGTACCAACATCAGTAGGGCTCCAGCT
GCCCCCCACCGTCCCTGGCACCCACAACTACACTGACTCCCCTAGCATCACTCCGGTCAGCCGCTCCCCA
CAGAGGCCCTCTCCAGCATCCAGCGAATGCACCTCTCTGTCCCCAGGCCTCAACAATACTGAGTCTGGTA
TCACAGTGAGGCCCGAGTCACCCCAGCCACTCCTGGGTGGGCCTTCGCTTACTAAAGCCGAGCCAGTCAG
CCTGCCTTGCACAAGTACAAGGACAGGAGATGCTCCTGTGGTGGGTGGGCAGGTCAGTGGGTTGCCCACT
TCAGCTGCCACTGCTGTCACTGACAGCGCCTGCACAAGTCTCGGGAGCCCTGGTCTTCCAGCCGTCTCTG
ACCAATTCAAGGCCCAGTTTCCTTTCGGCGGGCTGCTTGACTCTATGCAAACGTCAGAGACCTCGAAACT
GCAGCAGCTAGTGGAGAACATCGATAAGAAGATGACCGACCCGAACCAGTGTGTCATCTGCCACCGCGTG
CTGAGCTGCCAGAGTGCACTGAAGATGCACTACAGGACCCACACAGGGGAAAGGCCCTTCAAGTGTAAGA
TTTGTGGCCGCGCCTTCACCACCAAAGGCAACCTGAAGACGCACTTCGGGGTACACCGCGCCAAGCCCCC
ACTCCGCGTGCAGCATTCCTGCCCCATCTGCCAGAAGAAGTTCACGAACGCCGTCGTGCTGCAACAGCAT
ATCCGTATGCACATGGGAGGACAGATCCCAAACACGCCACTGCCTGAGGGCCTGCAGGAGGCCATGGACG
CCGACCTGCCCTTTGATGAAAAGAACGCAGAGACCCTCAGCAGCTTTGACGATGACATCGACGAGAACTC
CATGGAGGAGGACTCGGAGCTGAAGGACACGGCCAGCGACTCGTCTAAACCACTTCTGTCTTACTCGGGC
TCCTGTCCGCCCTCGCCCCCGTCGGTCATCTCCAGCATCGCTGCCCTCGAGAACCAGATGAAAATGATTG
ACTCGGTCATGAACTGCCAGCAACTGGCCAACTTGAAGTCGGTGGAAAACGGGTCTGGGGAAAGCGATCG
CTTGAGCAACGACTCCTCCTCTGCGGTGGGCGACCTGGAGAGCCGCAGTGCAGGCAGCCCTGCCCTATCG
GAGTCCTCGTCCTCCCAGGCTCTGTCCCCTGCTCACAGTAATGGTGAGAGCTTCCGGTCCAAGTCGCCAG
GCCTTGGCCACCAGGAAGATCCGCAGGAGATCCCACTGAAGACTGAAAGGCTAGACAGCCCACCCCCCGG
CCCAGGAAATGGAGGTGCCCTGGACCTGACAGCGGGCCACCCTGGTCGGCCACTCATCAAGGAGGAGGCC
CCTTTCAGCCTGCTGTTCCTGAGCAGAGAGCGCGGTAAGTGTGCGAGCACTGTGTGTGGTGTCTGTGGCA
AGCCCTTTGCTTGCAAAAGTGCGTTGGAAATCCACTACCGCAGCCATACCAAGGAGAGGCCGTTTGTCTG
CACGGTCTGCAGGCGAGGCTGCTCCACTATGGGTAACTTAAAGCAGCACTTACTGACACACAAGTTGAAA
GAGCTGCCTTCTCAGGTGTTTGACCCCAACTTTACTCTAGGTCCCAGCCACAGCACGCCTAGCCTGGCCT
CCAGCCCTGCGCCCACCATGATCAAAATGGAAGTGAACGGCCACAGCAAGGCTATCGCACTGGGTGAGGG
TCCAGCGCTACCAGCCGGAGTCCAGGTCCCTACTGGGCCCCAGACAGTGATGAGCCCTGGCCTGGCACCC
ATGCTGGCACCCCCTCCACGCCGGACACCCAAGCAGCACAACTGTCAGTCATGTGGGAAGACCTTCTCCT
CAGCCAGTGCCCTGCAGATCCATGAGCGCACCCACACTGGGGAGAAGCCCTTTGGCTGCACCATCTGCGG
CAGGGCCTTCACCACCAAGGGCAATCTCAAGGTACACATGGGCACCCACATGTGGAACAATGCACCCGCG
AGGCGTGGCCGCCGCCTGTCTGTGGAGAACCCCATGGCTCTGCTCGGTGGCGATGCTCTCAAGTTCTCTG
AGATGTTCCAGAAGGACCTGGCAGCTCGAGCGATGAATGTGGACCCCAGCTTTTGGAACCAGTACGCCGC
TGCCATCACCAACGGGCTGGCCATGAAGAACAATGAGATCTCTGTCATCCAGAACGGAGGCATCCCTCAG
CTCCCAGTAAGTCTAGGCGGAGGTGCCATCCCGCCTTTGGGTGCCATGGCCAGTGGGGTGGACAAGGCAC
GCACTGGCAGTAGTCCGCCCATTGTCAGCTTGGACAAAGCGAGCTCAGAGACGGGAGCCAGCCGGCCATT
CGCGAGGTTCATTGAGGATAACAAGGAGATTGGGATCAATTAG

Translation (1320 aa):
MSRRKQAKPQHLKSDEELPPQDGASEHGVPGDGAEDADSGSESRSGSEETSVCEKCCAEFFKWADFLQHK
KTCTKNPLVLIVHDDEPAPPSEDFPEPSPASSPSDRTESEVAEEVAPTEGSEVKAATKEAEPMDVEVSTD
KGPPGPSVPPPPPALPPQPEPAAFSMPSTNVTLETLLSTKVAVAQFSQGARAGGTTGAGGSVGAVAIPMI
LEQLVALQQQQIHQLQLIEQIRSQVALMSRQPGPPLKPSASAPGTASVQLQGLTPHAALQLSAGPATASA
GSGSTLPAAFDGPQHLSQPASGTSTPCSTSAAPPDSGAHPACSTGPAPGAVAAASSTVGNAVQPQNASTP
PALGPGPLLSSASNLPNPLLPQTSSSSVIFPNPLVSIAATANALDPLSALMKHRKGKPPNVSVFEPKASA
EDPFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFKCNICGNRFSTKGNLKVHFQRHKEKYPHIQMNPYP
VPEYLDNVPTCSGIPYGMSLPPEKPVTTWLDSKPVLPTVPTSVGLQLPPTVPGTHNYTDSPSITPVSRSP
QRPSPASSECTSLSPGLNNTESGITVRPESPQPLLGGPSLTKAEPVSLPCTSTRTGDAPVVGGQVSGLPT
SAATAVTDSACTSLGSPGLPAVSDQFKAQFPFGGLLDSMQTSETSKLQQLVENIDKKMTDPNQCVICHRV
LSCQSALKMHYRTHTGERPFKCKICGRAFTTKGNLKTHFGVHRAKPPLRVQHSCPICQKKFTNAVVLQQH
IRMHMGGQIPNTPLPEGLQEAMDADLPFDEKNAETLSSFDDDIDENSMEEDSELKDTASDSSKPLLSYSG
SCPPSPPSVISSIAALENQMKMIDSVMNCQQLANLKSVENGSGESDRLSNDSSSAVGDLESRSAGSPALS
ESSSSQALSPAHSNGESFRSKSPGLGHQEDPQEIPLKTERLDSPPPGPGNGGALDLTAGHPGRPLIKEEA
PFSLLFLSRERGKCASTVCGVCGKPFACKSALEIHYRSHTKERPFVCTVCRRGCSTMGNLKQHLLTHKLK
ELPSQVFDPNFTLGPSHSTPSLASSPAPTMIKMEVNGHSKAIALGEGPALPAGVQVPTGPQTVMSPGLAP
MLAPPPRRTPKQHNCQSCGKTFSSASALQIHERTHTGEKPFGCTICGRAFTTKGNLKVHMGTHMWNNAPA
RRGRRLSVENPMALLGGDALKFSEMFQKDLAARAMNVDPSFWNQYAAAITNGLAMKNNEISVIQNGGIPQ
LPVSLGGGAIPPLGAMASGVDKARTGSSPPIVSLDKASSETGASRPFARFIEDNKEIGIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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