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Report for CCDS89298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89298.1 Public Mus musculus 18 Gm45871 23 108 98 CCDS HistoryNCBI Gene:108168395Re-query CCDS DB by CCDS ID:89298.1Re-query CCDS DB by GeneID:108168395See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89298.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000211710.1 ENSMUSP00000147542.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211710.1Link to Ensembl Protein Viewer:ENSMUSP00000147542.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211710Re-query CCDS DB by Protein ID:ENSMUSP00000147542
Original member Current member NCBI NM_001362365.1 NP_001349294.1 Accepted alive Link to Nucleotide Sequence:NM_001362365.1Link to Protein Sequence:NP_001349294.1Re-query CCDS DB by Nucleotide ID:NM_001362365Re-query CCDS DB by Protein ID:NP_001349294Link to BLAST:NP_001349294.1

Chromosomal Locations for CCDS 89298.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 90579897 90579899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90588956 90589082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90589274 90589334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90590831 90592262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGGATGCAGTGACCTATGATGATGTGCATGTAAACTTGACTCGAGAAGAATGGGCTTTGCTGGATCCTT
CACAGAAGCGTCTCTACAAAGATGTGATGCTGGAGACCTACAAGAACCTCACTGCTATAGGCTACAATTG
GGAATACCATAACATTGAAGAACATTGTCAAAGTTCTAGAAGACATAGAAGGCATGAAAGAAGTCATACT
GGAGAGAAACCCTCTGTATTCAACACTCAATGTGGTAAAGCCTTTGCATGTCACACTTATCCTCAAAGGC
ATGAAAGAATTCATACTAGAGAGAAATCCTATGAAGGTGTTCAATATGATGAAGCCTTGGTACATCACAG
TAATCTCCAAACACATAAAAGAACACATCCTAAAGAGAAACCCTACAAATGCGATCAATGTGATAAAGCC
TATTCACAACATAGTCATCTCCAAAGACATAAAAGAAAACACACTGGAGAGAAACCTTATGAATGTAAGC
AATGTGGCAAAGCCTTTGCATACCATTCTGAACTTCAGAGTCATGAAAGAATTCATACTGGAGAGAAACC
CTACAAATGTAATCAATGTGGTAAAGCCTTTGCACATCATTGCAATCTTCGAGTGCATAAAATAATACAT
ACTGGAGAGAAGCCCTACAAATGCAATCAATGTGATAAAGCCTATTCACAACACTGTAATCTCCAAATAC
ATAAAAGTACACATACTGGAGAGAAGTCCTATAAATGTAATCAATGTGGTAAAGCCTTTGTATATTATGG
TTATCTTCAAAGACATAAAACAACACACACTGGAGAGAAACCTTACAAATGTAATCTATGTGGTAAAGCC
TTTGCATCTCATCGTTATCTCCAAGTACATAAAAGTACACATACTGGAGAGAAACCCCATGAATGTAATC
AATGTGGTAAAGCCTTTGTATATCATGATCATCTTCAAATACATAAAAGAACACATACTGGAGAGAAACC
CTATGAATGTAATCACTGTGGTAAAACCTTTGCAGCCCATCGTTATCTCCAAGTACATAAAAGAACACAT
ACTGGAGAGAAACCCTATGAATGTAATCAATGTGGTAAAGCCTTTGCATCTCATAGTTATCTCCAAGTAC
ATAAAAGAACACATACTGGAGAGAAACCCTATGAATGCAGTCAATGTGATAAAGCTTTTGCATATCCTGG
TTATCTCCAAGTACATAAAAGAACACATACTGGAGAGAAACCGTATGAATGCAATCAATGTGGTAAAGCC
TTTGCAGGTCAGAATGTTCTTAAAAGACATGAAAAAATTCATACTGGTGAGAAACCTTACATATGTAATG
AATGTGGTAAAGCCTTTGTGAGTAACACTAGTCTCCAAATACATAAAGCAACACATACTGGAGAGAAGCC
TTATGAATGTAAGCAATGTAGTAAATCCTTTGCCTCTCATGGCCAACTTCAAAGTCATGAAATAATTCAC
ACTGGAGAGAAACCCTACAAATGTAATGGATGTGATAAAGCCTATTCACGACACAGTCATCTCCAAAGAC
ATAAAAGAACACATACTATGACTGTAACCAATGTGATAGAGCCTTTACAGGTCACAGTGATCTTCAAAGG
TATGGAAGTTTGA

Translation (540 aa):
MDAVTYDDVHVNLTREEWALLDPSQKRLYKDVMLETYKNLTAIGYNWEYHNIEEHCQSSRRHRRHERSHT
GEKPSVFNTQCGKAFACHTYPQRHERIHTREKSYEGVQYDEALVHHSNLQTHKRTHPKEKPYKCDQCDKA
YSQHSHLQRHKRKHTGEKPYECKQCGKAFAYHSELQSHERIHTGEKPYKCNQCGKAFAHHCNLRVHKIIH
TGEKPYKCNQCDKAYSQHCNLQIHKSTHTGEKSYKCNQCGKAFVYYGYLQRHKTTHTGEKPYKCNLCGKA
FASHRYLQVHKSTHTGEKPHECNQCGKAFVYHDHLQIHKRTHTGEKPYECNHCGKTFAAHRYLQVHKRTH
TGEKPYECNQCGKAFASHSYLQVHKRTHTGEKPYECSQCDKAFAYPGYLQVHKRTHTGEKPYECNQCGKA
FAGQNVLKRHEKIHTGEKPYICNECGKAFVSNTSLQIHKATHTGEKPYECKQCSKSFASHGQLQSHEIIH
TGEKPYKCNGCDKAYSRHSHLQRHKRTHTMTVTNVIEPLQVTVIFKGMEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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