NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89320.1 Public Mus musculus 19 Gm550 23 108 98 CCDS HistoryNCBI Gene:225852Re-query CCDS DB by CCDS ID:89320.1Re-query CCDS DB by GeneID:225852See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89320.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000235513.1 ENSMUSP00000158551.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235513.1Link to Ensembl Protein Viewer:ENSMUSP00000158551.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235513Re-query CCDS DB by Protein ID:ENSMUSP00000158551
Original member Current member NCBI NM_001362427.1 NP_001349356.1 Accepted alive Link to Nucleotide Sequence:NM_001362427.1Link to Protein Sequence:NP_001349356.1Re-query CCDS DB by Nucleotide ID:NM_001362427Re-query CCDS DB by Protein ID:NP_001349356Link to BLAST:NP_001349356.1

Chromosomal Locations for CCDS 89320.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6094683 6094742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6095073 6095170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6095368 6095466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6097654 6097720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6097854 6098084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGCAGCCTGCTGAGCCACAGCTAGAAGAACCTAAGGACTCCGGGGAGCCCAATATAGAGCCATCTTCAG
AGCCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCC
CATAGACGATGAGACGACGGACACAGACATATATGAGAATCAGTTCATTGATGAGGATGACTGGGGCCCT
AGACGGACCTCAGAAGAAATAGAGCTTTTGCAAAGGGACTGCAGGAGGCTTGAGGAATCACTGTACGCTA
ACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTGCCTACCGTGGTGTATGAGGACCTGGA
GAGCATTATGATCATCCCAGAGGAATCCAGGCTCACTCAGGAAACAGATGAAGACTCGCAAGTCAAAGCA
GAGGGACATTCAAAAGAAAGCAAGGGTCAGCCAGCAAGCAGAGGTCACTCAGGAGAAACCAGGGGCTACC
CAGGAGGAAGCAGGGGCTACCCAGGAGGAAGCAGGGGCTACCCAGGAGGAAGTCCAACCTCTTGA

Translation (184 aa):
MQPAEPQLEEPKDSGEPNIEPSSEPALDEQPEPTVTFLFTLLNTPVPIDDETTDTDIYENQFIDEDDWGP
RRTSEEIELLQRDCRRLEESLYANQRENLALEEKLENLPTVVYEDLESIMIIPEESRLTQETDEDSQVKA
EGHSKESKGQPASRGHSGETRGYPGGSRGYPGGSRGYPGGSPTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH