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Report for CCDS89381.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89381.1 Public Mus musculus 19 Lipk 23 108 98 CCDS HistoryNCBI Gene:240633Re-query CCDS DB by CCDS ID:89381.1Re-query CCDS DB by GeneID:240633See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89381.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225505.1 ENSMUSP00000152955.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225505.1Link to Ensembl Protein Viewer:ENSMUSP00000152955.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225505Re-query CCDS DB by Protein ID:ENSMUSP00000152955
Original member Current member NCBI NM_172837.4 NP_766425.1 Accepted alive Link to Nucleotide Sequence:NM_172837.4Link to Protein Sequence:NP_766425.1Re-query CCDS DB by Nucleotide ID:NM_172837Re-query CCDS DB by Protein ID:NP_766425Link to BLAST:NP_766425.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766425.1 398 Q8BM14-1 398 100% 0 0

Chromosomal Locations for CCDS 89381.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34018690 34018791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34020223 34020340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34021542 34021740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34022407 34022516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34032228 34032364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34039055 34039201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34040377 34040448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34043049 34043120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34046776 34047015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGTGGTGGCTTTTAGCAACAACATGTTGTGTGCTTCTTTCCGGACCCATAGATGGCTATAAGCAAGAAA
GCATCACAAATCCTGAAGCCAATATGAATATTAGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAA
GCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCA
AGGAAAACAGCTCCGAAGGCAGTTGTGTATCTGCAGCATGGCTTAATTGCATCTGCCAATAACTGGATTT
GCAACCTGCCCAACAACAGCTTGGCTTTCCTTCTGGCCGATAGTGGTTATGACGTGTGGTTGGGGAACAG
CCGAGGAAACACCTGGTCCAGAAATCACCTGAGACTGTCACCTAAATCACCGCAATATTGGGCCTTCAGC
TGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGC
AACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAGCGTTCATAGCATTCTCTACGAATCCAGAGCT
GGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATG
AAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAGGTATTGTTTGGTGACAAAATGTTCTCCACTCACA
CGTGGTTTGAACAATTCATCGCTACCAAAGTGTGCAACCGGAAGTTATTCCATCAGCTATGCAGCAACTT
CCTGTTTTCTCTAAGTGGATTTGATCCCCAAAACTTAAACATGAGTCGCTTGGATGTTTATCTGTCACAG
AGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAGGCTGTCAATTCTGGTCAACTCCAAG
CTTTTGACTGGGGCAACCCTGACCAGAACATGATGCACTTCAACCAGCTTACACCTCCTGTGTATAACAT
CTCTAAGATGCGTGTCCCAACAGCAATGTGGAGTGGAGGACAGGATGTTGTGGCAGATGCTAAGGACACT
AAAAATCTGCTGCCTAAAATTGCCAACCTTATCTACTACAAGGAGATTCCACACTACAATCATATGGATT
TTTACCTCGGACAGGACGCACCCCAGGAAGTTTATGGAGACCTAATTAGAATGATAGAAGAATCTTTGCA
AAATTAA

Translation (398 aa):
MWWLLATTCCVLLSGPIDGYKQESITNPEANMNISELISYWGYPYEKHDVITEDGYILGTYRIPHGKGCS
RKTAPKAVVYLQHGLIASANNWICNLPNNSLAFLLADSGYDVWLGNSRGNTWSRNHLRLSPKSPQYWAFS
WDEMAKYDLPATVNLILEKSGQKQLFYVGHSQGTTIAFIAFSTNPELAKKIRLFFALAPVATVKYTRSPM
KKLTTLSRKAVKVLFGDKMFSTHTWFEQFIATKVCNRKLFHQLCSNFLFSLSGFDPQNLNMSRLDVYLSQ
SPAGTSVQNMLHWAQAVNSGQLQAFDWGNPDQNMMHFNQLTPPVYNISKMRVPTAMWSGGQDVVADAKDT
KNLLPKIANLIYYKEIPHYNHMDFYLGQDAPQEVYGDLIRMIEESLQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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