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Report for CCDS89391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89391.1 Public Mus musculus 19 Blnk 23 108 98 CCDS HistoryNCBI Gene:17060Re-query CCDS DB by CCDS ID:89391.1Re-query CCDS DB by GeneID:17060See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89391.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117695.7 ENSMUSP00000112473.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117695.7Link to Ensembl Protein Viewer:ENSMUSP00000112473.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117695Re-query CCDS DB by Protein ID:ENSMUSP00000112473
Original member Current member NCBI NM_001365054.1 NP_001351983.1 Accepted alive Link to Nucleotide Sequence:NM_001365054.1Link to Protein Sequence:NP_001351983.1Re-query CCDS DB by Nucleotide ID:NM_001365054Re-query CCDS DB by Protein ID:NP_001351983Link to BLAST:NP_001351983.1

Chromosomal Locations for CCDS 89391.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40929173 40929292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40934427 40934582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40936273 40936356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40937651 40937718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40939367 40939398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40940172 40940256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40943302 40943344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40944127 40944154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40945487 40945556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40950954 40951025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40952351 40952432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40959699 40959862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40962345 40962501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40964243 40964283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40968499 40968548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40972586 40972651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40994012 40994058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGACAAGCTGAATAAGATAACTGTCCCTGCCAGCCAGAAGCTGAGACAGCTTCAAAAGATGGTCCATG
ATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAAAGCTAAAAGTCAAAGGCCCTCCAAGTGT
TCCTCGAAGGGACTACGCATTAGACAGCCCTGCAGATGAAGAGGAGCAGTGGTCAGATGACTTCGACAGT
GACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACG
ATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGG
CGAGTATGTAGATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCC
AGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAG
TCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAGGCTGATTATGTGGTCCCTGTGGAAGATAACGATGA
AAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGGCTCCCATGGTGAATAGATCAACC
AAGCCAAACAGTTCCTCAAAGCACATGTCGCCTCCAGGGACTGTCGCAGGTCGAAACAGTGGGGTCTGGG
ACTCCAAGTCATCTTTGCCTGCCGCACCATCCCCACTACCACGGGCTGGGAAGAAGCCAGCTACACCACT
TAAGACTACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAGAAAAGCCTGTTCCTGCTGAG
CGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAAACCTG
TCCATCAAAAGCCTGTACCCTTGCCAAAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCC
ATTTAATTCGACGTTTGCAGACCAGGAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGAC
CGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAGGATGGATCGTTTCTTATTCGGAAGAGCTCTG
GCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACG
GTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGTACTTCGGAAGTGTT
GTGGAAATCGTCAACAGTCACCAGCACAACCCCCTGGTTCTTATTGACAGTCAGAATAACACGAAAGATT
CCACGAGACTGAAATATGCTGTGAAGGTTTCATAA

Translation (454 aa):
MDKLNKITVPASQKLRQLQKMVHDIKNNEGGIMDKIKKLKVKGPPSVPRRDYALDSPADEEEQWSDDFDS
DYENPDEHSDSEMYVMPAEETGDDSYEPPPAEQQTRVVHPALPFTRGEYVDNRSSQRHSPPFSKTLPSKP
SWPSAKARLASTLPAPNSLQKPQVPPKPKDLLEDEADYVVPVEDNDENYIHPRESSPPPAEKAPMVNRST
KPNSSSKHMSPPGTVAGRNSGVWDSKSSLPAAPSPLPRAGKKPATPLKTTPVPPLPNASNVCEEKPVPAE
RHRGSSHRQDTVQSPVFPPTQKPVHQKPVPLPKAGSPAADGPFHSFPFNSTFADQEAELLGKPWYAGACD
RKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSV
VEIVNSHQHNPLVLIDSQNNTKDSTRLKYAVKVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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