NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89461.1 Public Mus musculus 2 Odf2 23 108 98 CCDS HistoryNCBI Gene:18286Re-query CCDS DB by CCDS ID:89461.1Re-query CCDS DB by GeneID:18286See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89461.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113765.7 ENSMUSP00000109394.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113765.7Link to Ensembl Protein Viewer:ENSMUSP00000109394.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113765Re-query CCDS DB by Protein ID:ENSMUSP00000109394
Original member NCBI NM_001369060.1 NP_001355989.1 Updated not alive Link to Nucleotide Sequence:NM_001369060.1Link to Protein Sequence:NP_001355989.1Re-query CCDS DB by Nucleotide ID:NM_001369060Re-query CCDS DB by Protein ID:NP_001355989
Current member NCBI NM_001369060.2 NP_001355989.1 Accepted alive Link to Nucleotide Sequence:NM_001369060.2Link to Protein Sequence:NP_001355989.1Re-query CCDS DB by Nucleotide ID:NM_001369060Re-query CCDS DB by Protein ID:NP_001355989Link to BLAST:NP_001355989.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355989.1 830 A3KGV1-1 830 100% 0 0

Chromosomal Locations for CCDS 89461.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 29890971 29891002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29892186 29892276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29893444 29893569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29901077 29901247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29902181 29902341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29903321 29903450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29903976 29904107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29912569 29912640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29914231 29914302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29914394 29914510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29914734 29914919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29915208 29915317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29917610 29917745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29920775 29920885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29921004 29921108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29922213 29922371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29923539 29923639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29925940 29926102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29926704 29926829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29930470 29930661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2493 nt):
ATGTCTGCCTCATCCTCAGGCGGCTCCCCCAGGTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCA
CACAGAAAAAAGTCTTGAGAACACCTTGTGGCGCACCCAGTGTAACTGTTACGAAATCTCATAAGCGCGG
AATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCT
GGAAAATCATCTGCCCGGCATGTGGGATGCAAGTGGGAGAATCCACCTCATTGCCTGGAGATCACACCAC
CATCTTCAGAAAAGCTGGTCTCGGTGATGCGATTAAGTGACCTTTCTACAGAAGACGACGATTCAGGTCA
CTGTAAAATGAACCGTTACGATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTGTCTCAAATCTGAG
GTCAAGATGCAGAAAGGTGAACGCCAAATGGCCAAAAGGTTCCTGGAGGAGAGGAAGGAAGAGCTGGAGG
AGGTGGCACACGAGCTTGCAGAGACGGAGCATGAGAACACGGTGCTCAGACACAACATCGAGCGTATCAA
GGAGGAGAAGGACTTCACCATGCTTCAAAAGAAACACCTCCAGCAGGAGAAGGAATGCCTCATGTCCAAA
CTAGTGGAGGCTGAAATGGATGGAGCAGCTGCTGCCAAGCAGGTCATGGCCTTGAAGGATACCATCGGGA
AGCTGAAAACCGAGAAACAGATGACTTGCACCGACATCAACACCTTAACAAGGCAGAAGGAACTTCTCCT
GCAGAAGCTGAGTACCTTTGAGGAGACCAATCGCACCCTCCGAGATCTGTTGAGGGAACAGCACTGCAAA
GAGGATTCCGAGAGACTAATGGAGCAACAAGGTACATTACTGAAGCGTCTGGCAGAGGCAGACTCAGAGA
AAGCGCGCCTGCTGTTACTACTGCAAGACAAGGACAAGGAGGTGGAAGAACTCCTCCAGGAGATACAATG
TGAAAAGGCTCAAGCAAAGACAGCGTCTGAGCTTTCCAAGTCCATGGAGTCCATGCGGGGGCATTTGCAG
GCACAGCTTCGCTGCAAAGAGGCTGAGAACAGTCGCCTGTGCATGCAGATCAAGAACTTAGAGCGCAGTG
GGAACCAGCATAAGGCGGAAGTAGAGGCCATCATGGAGCAGCTAAAGGAACTGAAGCAGAAGGGAGACCG
AGACAAAGAGACCCTAAAGAAGGCCATCCGAGCCCAGAAAGAGCGAGCCGAGAAGAGTGAGGAGTATGCC
GAGCAGCTGCATGTGCAACTGGCCGACAAGGACCTTTATGTTGCTGAAGCTTTATCTACTCTGGAGTCTT
GGAGGAGCCGTTACAACCAGGTTGTGAAGGACAAAGGAGATCTTGAGTTGGAGATTATCGTCCTAAATGA
CCGGGTGACAGATCTTGTAAACCAACAACAAAGCTTGGAGGAGAAGATGCGGGAAGACCGGGACAGCTTG
GTAGAGAGGCTGCACCGGCAGACGGCTGAGTACTCTGCATTCAAGCTAGAGAACGAGAGGCTCAAGGCTA
GCTTTGCCCCTATGGAGGACAAGCTCAACCAGGCTCACTTGGAGGTTCAGCAGCTGAAGGCGTCAGTGAA
GAACTACGAGGGGATGATAGACAACTACAAGAGCCAGGTGATGAAAACAAGATTGGAGGCTGATGAAGTG
GCTGCACAGCTAGAGCGCTGCGACAAAGAGAACAAGATGCTTAAAGACGAGATGAACAAAGAGATCGAGG
CGGCCCGTCGGCAGTTCCAGTCACAGCTGGCTGACCTACAACAGCTGCCTGACATCCTCAAGATCACGGA
GGCCAAGCTGGCTGAGTGCCAAGACCAGCTGCAGGGCTACGAGAGGAAGAACATCGACCTCACAGCCATC
ATTTCAGACCTGCGCAGCCGGATCGAACATCAGGGGGACAAGCTGGAGATGGCGAGAGAGAAACATCAGG
CTTCCCAGAAGGAAAATAAACAGCTGAGTCAGAAGGTGGATGAACTTGAGAGGAAACTGGAGGCTACCAG
CGCCCAGAATGTCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAGGCTCAGCTGCGG
TTGGAGGAGAAAACGAGGGAGTGTGGGTCATTGGCGAGGCAGTTGGAGAGTGCCATTGAAGATGCCAGGC
GACAGGTGGAGCAAACCAAGGAACAGGCACTCTCCAAGGAACGAGCAGCCCAGAGCAAAATCCTGGACCT
TGAGACTCAGCTGAGCAGGACCAAGACAGAACTTGGCCAGCTGCGGCGGACTCGTGATGATGCGGATCGC
AGATACCAGAGCCGCCTGCAGGATCTGAAAGATCGCCTGGAGCAGTCTGAGAGTACCAACCGCAGCATGC
AGAATTATGTCCAATTCCTCAAGGCCTCTTATGCAAATGTGTTTGGGGATGCTCCCTATACATCCTCCTA
CCTGACGAGCTCACCCATCCGCTCCCGATCGCCCCCTGCCTGA

Translation (830 aa):
MSASSSGGSPRFPSCGKNGVTSLTQKKVLRTPCGAPSVTVTKSHKRGMKGDTVNVRRSVRVKTKVPWMPP
GKSSARHVGCKWENPPHCLEITPPSSEKLVSVMRLSDLSTEDDDSGHCKMNRYDKKIDSLMNAVGCLKSE
VKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSK
LVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCK
EDSERLMEQQGTLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQ
AQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYA
EQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSL
VERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEV
AAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAI
ISDLRSRIEHQGDKLEMAREKHQASQKENKQLSQKVDELERKLEATSAQNVEFLQVIAKREEAIHQAQLR
LEEKTRECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSKILDLETQLSRTKTELGQLRRTRDDADR
RYQSRLQDLKDRLEQSESTNRSMQNYVQFLKASYANVFGDAPYTSSYLTSSPIRSRSPPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH