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Report for CCDS89545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89545.1 Public Mus musculus 2 Serinc4 23 108 98 CCDS HistoryNCBI Gene:574418Re-query CCDS DB by CCDS ID:89545.1Re-query CCDS DB by GeneID:574418See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89545.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110613.8 ENSMUSP00000106243.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110613.8Link to Ensembl Protein Viewer:ENSMUSP00000106243.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110613Re-query CCDS DB by Protein ID:ENSMUSP00000106243
Original member Current member NCBI NM_001363097.1 NP_001350026.1 Accepted alive Link to Nucleotide Sequence:NM_001363097.1Link to Protein Sequence:NP_001350026.1Re-query CCDS DB by Nucleotide ID:NM_001363097Re-query CCDS DB by Protein ID:NP_001350026Link to BLAST:NP_001350026.1

Chromosomal Locations for CCDS 89545.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 121451978 121452174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121452355 121452505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121452632 121452680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121453096 121453168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121453998 121454209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121454944 121455037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121455276 121455355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121455663 121455841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121455991 121456155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121456455 121456553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGATGGGTGCAAAAGTTGTCACCGGCCGGAGCACCACCCAGGGTCTTGCACAGCAGCACGGTGGAGTCA
GTAATGTAGTGGAAACCCCCTTCAATCAGGCATCCTGCTGTGGACCTGTTTCTTGGACCAGTGGCTGCCA
CTCTCTGACAGAGTCTAGGTGTAGCCGCCTGCTCTACATCCTCCTCCACGTGGGAGCCTCAGCAATCTGC
TGCCTCCTGCTTTCGAAGACAGTGGTAGAAAGGGTCTGGGGCAAAGCACATGGGATCCAGATGCCCTCAG
TGCTATGTGCCCACCTGTTTGGCAGCTCGGACTGCCCAGTTCTCAGTGGCTCTGGCGCTGTGTATCGAGT
GTGTGCAGGAACTGCCACCTTCCACCTGCTGCAGGCTGTGCTGCTAGTTCGCCTCCACTCCCCCACCAAC
CCTCGGGCACAGCTGCATAACAGCTTCTGGAGCCTCAAGCTGTTGTTCCTGTTAGGTCTCTGTGTCGTTG
CCTTCTGCATCCCTGATGAGGATCTCTTCCCAGCCTGGCATTATATTGGCATCTGTGGAGGCTTCACATT
CATCCTATTACAGCTGGTGCTTATCACAGCCTTTGCCCAGTCCTGGAACAAGAATTGGCAGACTGGTGCA
GCTCAAGACTGTAGCTGGCTCCTAGGTGTGTCACTGGCCACACTAGGGTTCTACAGCATGGCGGGTGTGG
GAGCTGTGTTGCTGTTCCACCAGTACACACACCCTGACGGTTGCCTGCTCAACAAGATGTTACTCAGTCT
GCACCTTTGCTTCTGTGGCCTCCTGTCTCTCCTCTCCATCGCACCTTGCATCCGCCGCACAACGAGGCTT
CCTACCTGGCCGAGTTATTTGGACCCTTGTGGATTATCAAGGTTTACAAGTATGAGTTCCAGAAGCCCTC
AGTCTGTTTCTGCTGCCCCCAAACAGTGGAGCCAGAGGATGGGCAAAGGAGCAGGGCCAGGTCAGCTGAC
CAAGAGACCCCTCCAGCTGCTCAGGTGCAGAGCCAGCATCTTTCCTACAGCTACTCTGGCTTCCACTTCG
CCTTCTTCCTTGCTTCACTCTATGTCATGGTTACCCTTACCAACTGGTTCAGCTATGAGGAAGCAGAACT
GGAGAAGACCTTCACTAAGGGTAGCTGGGCTACCTTCTGGGTTAAAGTTGCCTCATGCTGGGCCTGTGTC
CTCCTCTATCTGGGGCTGCTCCTGGCACCACTGCTGGCTCCCCACTCAGAATCACCACCACCCTAGTATA
TTCAGGCAACACTGCCATGGCATCAGTACTGCCACATAA

Translation (432 aa):
MMGAKVVTGRSTTQGLAQQHGGVSNVVETPFNQASCCGPVSWTSGCHSLTESRCSRLLYILLHVGASAIC
CLLLSKTVVERVWGKAHGIQMPSVLCAHLFGSSDCPVLSGSGAVYRVCAGTATFHLLQAVLLVRLHSPTN
PRAQLHNSFWSLKLLFLLGLCVVAFCIPDEDLFPAWHYIGICGGFTFILLQLVLITAFAQSWNKNWQTGA
AQDCSWLLGVSLATLGFYSMAGVGAVLLFHQYTHPDGCLLNKMLLSLHLCFCGLLSLLSIAPCIRRTTRL
PTWPSYLDPCGLSRFTSMSSRSPQSVSAAPKQWSQRMGKGAGPGQLTKRPLQLLRCRASIFPTATLASTS
PSSLLHSMSWLPLPTGSAMRKQNWRRPSLRVAGLPSGLKLPHAGPVSSSIWGCSWHHCWLPTQNHHHPSI
FRQHCHGISTAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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