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Report for CCDS89636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89636.1 Public Mus musculus 3 Wdr49 23 108 98 CCDS HistoryNCBI Gene:213248Re-query CCDS DB by CCDS ID:89636.1Re-query CCDS DB by GeneID:213248See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 89636.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000193989.3 ENSMUSP00000144721.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193989.3Link to Ensembl Protein Viewer:ENSMUSP00000144721.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193989Re-query CCDS DB by Protein ID:ENSMUSP00000144721
Original member Current member NCBI NM_001370850.1 NP_001357779.1 Accepted alive Link to Nucleotide Sequence:NM_001370850.1Link to Protein Sequence:NP_001357779.1Re-query CCDS DB by Nucleotide ID:NM_001370850Re-query CCDS DB by Protein ID:NP_001357779Link to BLAST:NP_001357779.1

Chromosomal Locations for CCDS 89636.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 75274988 75275118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75298106 75298252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75301807 75301910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75323603 75323784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75332241 75332438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75333190 75333377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75335198 75335359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75337752 75337850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75339402 75339532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75358347 75358462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75381915 75382079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75396868 75397101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75429289 75429437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75431081 75431207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGAGTGGTATAAATACTGTGGTGTTGGCATGGAGAGAGAAGTCAAAAAAACTCCTTAAAATGACATCTT
TCAACATTGCCCAGGGCATTCACGCTTTTGATTACCACTCTCGGCTCAATTTAATTGCAACGGCTGGCAT
AAACAATAAAGTTTGCCTTTGGAATCCCTATGTCCTGTCTAAACCAGTTGGTGTTCTATGGGGTCATTCA
GCCAGTGTCATAGCAGTTCAATTCTTTGCTGAGAGAAAACAACTTTTCAGCTTCTCCAGGGATAAAGTTT
TGAGACTCTGGGATATTCAGCATCAACTGTCCATTCAAAGGATAACCTGTTCTTTCCCCAAAAGTCAGGA
CTTCAGGTGTCTTTTCCAATTTGATGAAACCCATGGACGACTTTTTATTTCCTTCAATAATCAGCTTGCT
TTATTGGCCATAAAAAATGAAGCCAGCAAAAGGGTGAAGAGCCATCTAAAAGCAGTCAGTTGTGTTCTTT
ACAATTCCCTCCTGAAACAGGTAATCAGCTCTGATGTGGGTTCTACTGTGTCCTTCTGGATGATAGAAAC
TGGGCAGAAAATCAAACAGTTTGCTGGTTGTCATGGCAATGCAGAGATCAGCACCATGGCCTTGGATGCA
AATAAGACACGGCTTTTGACTGGCAGTACAGATGGAACTGTAAAGGTATGGGACTTCAACGGATATTGTC
ACTATACTCTTAATGTTGGGCAAGATGGAGTTGTGGACATTTCACAGATCCTGGTACTTAAGAAGACCAT
CCTGGTTGTAGGCTGGGAGAGAGCACTTATTGTATTTCGACCTCAGAACTTTAATCAGTTTTTCATCCAG
TCTGAAGAGTGGAAAGGGGGTGTCCATCACCAAGATGACATCTTGTGTGCTGCATTTTCACCCCCACAAA
CTCTTGTTACAGGGAGCTATGATGGAGAAATTGTTCTGTGGAATAACAACACAGAAAATGCTCACCATGC
GCTTCACCCTGGCTACCAGAGACAGCTAACATCCATGGTAGATGTAGAAGCCCAAAAGCTCAATTCCAGG
AGAAGCTGTGAAAGTCATGGTGTGGCAGACCAGGCCACCCAGGCTGCCCGAAATGTAAAGATTGACACAG
AAGGTAATAATGCTGTTATGAGGCTTTGCTTCCTTGAAGCAAGGAAAACCAAAGCAGCCACAGGAGGGGC
TAACCTGGTGTCATGTGGAGCATCTGGTTATGTCAGGTTTTGGGATACATTTAAGAAAGTACTTCTGGCT
GAATTTTTGGCTCATGCTGGTGTTGGATCCATCATTATGTCTACTGATAAACTGAATCAATACCTTGCCA
CTGGAGATTCTGATGGATGGTTGAAAATCTGGAACATAGAGGAGTATTGTACTAATTCCACTGAGAGCAA
AATCACCCAGCCTCCACCTTTGCTCAGATCATCTCAACCTCATGAGGACCGGATAAGTTCCTTGGAGATG
TGTGAGTCCTGTGGTCGTCTGCTCATCATCTCCTCCTCTGCAGACTGCAGTGTCTGTGTGACTGGACTTT
CCAGTGCTCCTGCCTTGATCTTTGGTCAGGCAAGCCACTGGAATATTGAAAACCACTTTTCTCTTCCTGA
ACGGGATACTAATTTAATAGAAAGTAAGAATCAAGAGGAAAGAATGAAAGTAAACCCTTTATTTTCTAAA
GAGGAGTTGTGCTTAGACTCAACAGAACATTCTCTACTTACTGAGGAAGATGAAGACAACTCGACACACC
TATCAACAGAAGAAATGAATTTCAGTCTGAAATATAAGAGGAGAAATAGCCTTAAGAAAAAAGCATATAA
ACCTTGCTATGGTGAAATTATACAAACATCAACCAGCACGTTTGGGTCCTTATGCCTTAGAACCCTGAAA
GAGCTGCCTGAAGTGAAGAAACCTGCATTTCTTCTAGACCCAGACAAATACTTTAAGGAAGGGCCGGAAG
AGGATGTATCCCAAATTCCAGAGCTTCCTCTGCTCTCTGAAACTTTGAAAGCTGTATTTGATGAGAAAAG
CCTATTCCCCAAAGAACTTCTCTATCGTGAAAGACAAGACAAGTCCCTGTGTCAAGAAACAAATGGTGAA
ATGAAGATAAAGCAAAACAAGAAGCAATTGTGA

Translation (710 aa):
MSGINTVVLAWREKSKKLLKMTSFNIAQGIHAFDYHSRLNLIATAGINNKVCLWNPYVLSKPVGVLWGHS
ASVIAVQFFAERKQLFSFSRDKVLRLWDIQHQLSIQRITCSFPKSQDFRCLFQFDETHGRLFISFNNQLA
LLAIKNEASKRVKSHLKAVSCVLYNSLLKQVISSDVGSTVSFWMIETGQKIKQFAGCHGNAEISTMALDA
NKTRLLTGSTDGTVKVWDFNGYCHYTLNVGQDGVVDISQILVLKKTILVVGWERALIVFRPQNFNQFFIQ
SEEWKGGVHHQDDILCAAFSPPQTLVTGSYDGEIVLWNNNTENAHHALHPGYQRQLTSMVDVEAQKLNSR
RSCESHGVADQATQAARNVKIDTEGNNAVMRLCFLEARKTKAATGGANLVSCGASGYVRFWDTFKKVLLA
EFLAHAGVGSIIMSTDKLNQYLATGDSDGWLKIWNIEEYCTNSTESKITQPPPLLRSSQPHEDRISSLEM
CESCGRLLIISSSADCSVCVTGLSSAPALIFGQASHWNIENHFSLPERDTNLIESKNQEERMKVNPLFSK
EELCLDSTEHSLLTEEDEDNSTHLSTEEMNFSLKYKRRNSLKKKAYKPCYGEIIQTSTSTFGSLCLRTLK
ELPEVKKPAFLLDPDKYFKEGPEEDVSQIPELPLLSETLKAVFDEKSLFPKELLYRERQDKSLCQETNGE
MKIKQNKKQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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