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Report for CCDS89677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89677.1 Public Mus musculus 3 Gstm1 23 108 98 CCDS HistoryNCBI Gene:14862Re-query CCDS DB by CCDS ID:89677.1Re-query CCDS DB by GeneID:14862See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89677.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126593.2 ENSMUSP00000118874.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126593.2Link to Ensembl Protein Viewer:ENSMUSP00000118874.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000126593Re-query CCDS DB by Protein ID:ENSMUSP00000118874
Current member NCBI NM_001374678.1 NP_001361607.1 Accepted alive Link to Nucleotide Sequence:NM_001374678.1Link to Protein Sequence:NP_001361607.1Re-query CCDS DB by Nucleotide ID:NM_001374678Re-query CCDS DB by Protein ID:NP_001361607Link to BLAST:NP_001361607.1

Chromosomal Locations for CCDS 89677.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108012689 108012778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108014753 108014863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108014945 108015118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108016328 108016428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108016519 108016600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108016884 108016948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108017351 108017426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108017740 108017775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGCCTATGATACTGGGATACTGGAACGTCCGCGGACTGACACACCCGATCCGCATGCTCCTGGAATACA
CAGACTCAAGCTATGATGAGAAGAGATACACCATGGGTGACGCTCCCGACTTTGACAGAAGCCAGTGGCT
GAATGAGAAGTTCAAGCTGGGCCTGGACTTTCCCAATCTGCCTTACTTGATCGATGGATCACACAAGATC
ACCCAGAGCAATGCCATCCTGCGCTACCTTGCCCGAAAGCACCACCTGGATGGAGAGACAGAGGAGGAGA
GGATCCGTGCAGACATTGTGGAGAACCAGGTCATGGACACCCGCATGCAGCTCATCATGCTCTGTTACAA
CCCTGACTTTGTGGCTGTTCCATTGCCAAACCCTTTGCTGGGGAGCCTGAGTCTAAAGGTGGTGACAGCC
AGCTGTTCTCTGCCTCAGGAGAAGCAGAAGCCAGAGTTCTTGAAGACCATCCCTGAGAAAATGAAGCTCT
ACTCTGAGTTCCTGGGCAAGAGGCCATGGTTTGCAGGGGACAAGGTCACCTATGTGGATTTCCTTGCTTA
TGACATTCTTGACCAGTACCGTATGTTTGAGCCCAAGTGCCTGGACGCCTTCCCAAACCTGAGGGACTTC
CTGGCCCGCTTCGAGGGCCTCAAGAAGATCTCTGCCTACATGAAGAGTAGCCGCTACATCGCAACACCTA
TATTTTCAAAGATGGCCCACTGGAGTAACAAGTAG

Translation (244 aa):
MPMILGYWNVRGLTHPIRMLLEYTDSSYDEKRYTMGDAPDFDRSQWLNEKFKLGLDFPNLPYLIDGSHKI
TQSNAILRYLARKHHLDGETEEERIRADIVENQVMDTRMQLIMLCYNPDFVAVPLPNPLLGSLSLKVVTA
SCSLPQEKQKPEFLKTIPEKMKLYSEFLGKRPWFAGDKVTYVDFLAYDILDQYRMFEPKCLDAFPNLRDF
LARFEGLKKISAYMKSSRYIATPIFSKMAHWSNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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