NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89790.1 Public Mus musculus 4 Dab1 23 108 98 CCDS HistoryNCBI Gene:13131Re-query CCDS DB by CCDS ID:89790.1Re-query CCDS DB by GeneID:13131See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89790.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106827.7 ENSMUSP00000102440.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106827.7Link to Ensembl Protein Viewer:ENSMUSP00000102440.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106827Re-query CCDS DB by Protein ID:ENSMUSP00000102440
Original member Current member NCBI NM_001369048.1 NP_001355977.1 Accepted alive Link to Nucleotide Sequence:NM_001369048.1Link to Protein Sequence:NP_001355977.1Re-query CCDS DB by Nucleotide ID:NM_001369048Re-query CCDS DB by Protein ID:NP_001355977Link to BLAST:NP_001355977.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355977.1 204 P97318-5 204 100% 0 0

Chromosomal Locations for CCDS 89790.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 104479209 104479275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104605298 104605437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104613169 104613267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104678702 104678833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104679453 104679572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104680070 104680108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104680191 104680208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGTCAACTGAGACAGAACTTCAAGTAGCTGTGAAAACCAGCGCCAAGAAAGACTCCAGGAAGAAAGGTC
AGGATCGCAGCGAAGCCACTTTGATAAAGAGGTTTAAAGGCGAAGGGGTCCGGTACAAAGCCAAGCTGAT
TGGGATTGATGAAGTGTCCGCAGCTCGGGGAGACAAGTTATGTCAAGATTCCATGATGAAGCTCAAGGGT
GTTGTTGCTGGCGCACGTTCCAAGGGAGAACACAAACAGAAAATCTTTTTAACCATCTCCTTTGGAGGAA
TCAAAATCTTTGATGAGAAGACGGGGGCCCTTCAGCATCACCATGCTGTTCATGAAATTTCCTACATTGC
GAAGGACATCACAGATCATCGGGCTTTCGGATACGTTTGCGGGAAGGAAGGGAATCACAGATTTGTGGCC
ATCAAAACAGCCCAGGCGGCTGAACCTGTTATCCTGGACTTGAGAGATCTCTTTCAACTCATCTATGAGC
TGAAGCAAAGAGAAGAATTGGAAAAAAAGGCACAAAAGGATAAGCAGTGTGAACAAGCTGTGTACCAGAC
CATTTTGGAAGAGGATGTGGAAGATCCCGTGTACCAGAACCTGCAGAAGAATTAA

Translation (204 aa):
MSTETELQVAVKTSAKKDSRKKGQDRSEATLIKRFKGEGVRYKAKLIGIDEVSAARGDKLCQDSMMKLKG
VVAGARSKGEHKQKIFLTISFGGIKIFDEKTGALQHHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVA
IKTAQAAEPVILDLRDLFQLIYELKQREELEKKAQKDKQCEQAVYQTILEEDVEDPVYQNLQKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH