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Report for CCDS89912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89912.1 Public Mus musculus 5 Dok7 23 108 98 CCDS HistoryNCBI Gene:231134Re-query CCDS DB by CCDS ID:89912.1Re-query CCDS DB by GeneID:231134See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89912.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101298.8 ENSMUSP00000098856.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101298.8Link to Ensembl Protein Viewer:ENSMUSP00000098856.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101298Re-query CCDS DB by Protein ID:ENSMUSP00000098856
Original member Current member NCBI NM_001348276.1 NP_001335205.1 Accepted alive Link to Nucleotide Sequence:NM_001348276.1Link to Protein Sequence:NP_001335205.1Re-query CCDS DB by Nucleotide ID:NM_001348276Re-query CCDS DB by Protein ID:NP_001335205Link to BLAST:NP_001335205.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335205.1 360 Q18PE0-2 360 100% 0 0

Chromosomal Locations for CCDS 89912.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 35056935 35056988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35057092 35057137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35075303 35075422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35077148 35077267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35079031 35079773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGACCGAGGCAGCGCTGGTGGAGGGCCAGGTCAAGCTGCGGGACGGCAAGAAGTGGAAGAGTAGGTGGC
TGGTGCTGCGCAAGCCATCGCCGGTGGCAGGGGCTGGAGTCTTCTTCTTGTCATCAGCTGAGGGAGAGCA
GATGAGCTTCCTGTTTGACTGCATCGTCCGAGGCATCTCCCCGACCAAAGGCCCGTTTGGGCTTCGGCCA
GTTCTCCCAGACCCGAGTTCTGGGGGACCCTCAGCCTCAGAAGAGCGTGTTGCCCAGGAAGCACTGGAAG
CCCTGCAGCTAGAGAAGAGGCTCAGCCTGCTTTCTCACTCTGGCCGGCCAGGCAGTGGAGGGGATGACAG
AAGTCTATCCAGTTCCTCTTCTGAGGCTAGCCACTCGGACATCAGCGCCAGCAGCAGGCTCACTGCGTGG
CCGGAGCAGTCCTCATCCTCGGCCGGCACATCACAAGAAGGACCAGGGCTGGTGGCTGCCCAGGGCCCAG
GAGAAGCCATGCTGGGAGCCTCAAGGCCACCCCTCAAGCCACTGCGGCCTCGGCAGTTACAGGAGGTTGG
CCGCCAGAGCTCCTCTGACAGTGGCATTGCCACAGGCAGCCACTCCTCTTACTCTGGCAGCTTCTCCTCT
TATGCCGGCAGCAACCTGGACGTGTGGCGGGCCGGTGAGGAATTCGGTTCTCTGCTCAGTCTGCCCCCTG
GAGCCAGCGCACCTGAGCCCAGACTGTGTGCCTGCCCACCTGGGGCGGCCGAGTACCAGGTGCCCACGTC
ACTGAGACACCACTATGACACACCTCGAAGCCTGCGCCAGGCCCCCAGAGACCCAAGCCCAGCTTCTCAG
GGCAGCTCTGACCACGGTTCAGCCACAGACTTGGGTGGTCAGGCGCCCACAGGGTGTCCCTCCAGTTGGC
TGGGAGCTCGCCGACGGGGACAGGCAACGGAAGGCCCAGGCAGTGACGCTGCGCTGCCGAGTCCATCCCC
TGGCGAGTCCTGGGAAGCAGGCAGCCCCCATGCAGGGCCGCCTCCAGCTTTCTTTTTGTCATGTTCAATC
TGTGGCGGACTCAAGGTAAAGCCCCCTCCCTGA

Translation (360 aa):
MTEAALVEGQVKLRDGKKWKSRWLVLRKPSPVAGAGVFFLSSAEGEQMSFLFDCIVRGISPTKGPFGLRP
VLPDPSSGGPSASEERVAQEALEALQLEKRLSLLSHSGRPGSGGDDRSLSSSSSEASHSDISASSRLTAW
PEQSSSSAGTSQEGPGLVAAQGPGEAMLGASRPPLKPLRPRQLQEVGRQSSSDSGIATGSHSSYSGSFSS
YAGSNLDVWRAGEEFGSLLSLPPGASAPEPRLCACPPGAAEYQVPTSLRHHYDTPRSLRQAPRDPSPASQ
GSSDHGSATDLGGQAPTGCPSSWLGARRRGQATEGPGSDAALPSPSPGESWEAGSPHAGPPPAFFLSCSI
CGGLKVKPPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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