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Report for CCDS89972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89972.1 Public Mus musculus 5 Ssh1 23 108 98 CCDS HistoryNCBI Gene:231637Re-query CCDS DB by CCDS ID:89972.1Re-query CCDS DB by GeneID:231637See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89972.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112298.9 ENSMUSP00000107917.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112298.9Link to Ensembl Protein Viewer:ENSMUSP00000107917.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000112298Re-query CCDS DB by Protein ID:ENSMUSP00000107917
Original member Current member NCBI NM_001363469.1 NP_001350398.1 Accepted alive Link to Nucleotide Sequence:NM_001363469.1Link to Protein Sequence:NP_001350398.1Re-query CCDS DB by Nucleotide ID:NM_001363469Re-query CCDS DB by Protein ID:NP_001350398Link to BLAST:NP_001350398.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350398.1 1020 Q76I79-2 1020 100% 0 0

Chromosomal Locations for CCDS 89972.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113942239 113943465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113946276 113946828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113950386 113950586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113951879 113952025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113953253 113953299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113955718 113955846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113957384 113957477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113958714 113958908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113961350 113961418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113966180 113966301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113966709 113966773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113970371 113970474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113989646 113989686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113993664 113993732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3063 nt):
ATGGCCTTGGTGACCCTTCAGCGCTCTCCCACGCCCAGCGCCGCGTCTTCCTCCGCAAGCAACAGCGAGT
TGGAGGCTGGCAGCGATGAAGAACGGAAATTGAACCTCAGCTTGAGTGAGAGCTTTTTCATGGTGAAAGG
AGCTGCCCTCTTCCTACAGCAGGGAAACAGCCCACAGGGCCAGCGGAGTCTTCAGCACCCTCACAAGCAT
GCAGGTGATCTGCCTCAGCACCTGCAAGTGATGATCAACCTCCTGCGTTGTGAAGACAGAATCAAGCTGG
CCGTGCGCCTAGAGAGTGTCTGGACCGACCGTGTCCGCTACATGGTCGTGGTATACACCAGCGGGCGCCA
GGACACCGAGGAGAATATTCTGCTGGGAGTTGACTTTTCCAGTAAGGAGAGCAAAAGCTGCACGATCGGA
ATGGTTCTTCGACTCTGGAGCGACACCAAGATTCACCTCGATGGGGACGGGTCTGCCCTGCAAGTGCTTC
ACAAGGCCTGCGAAGTGGCCCGGAGGCATAACTACTTCCCAGGAGGAGTGGCGCTCATCTGGGCCACCTA
CTATGAGAGCTGCATCAGCTCGGAGCAGAGCTGCATCAATGAGTGGAATGCCATGCAGGACCTGGAGTCC
ACGCGGCCCGACTCCCCCGCGCTGTTTGTGGACAAGCCAACCGAGGGCGAAAGAACTGAGCGCCTCATTA
AAGCCAAACTCCGGAGCATCATGATGAGCCAGGACCTTGAAAATGTGACTTCTAAGGAAATCCGAAATGA
GCTGGAGAAGCAAATGAACTGCAACCTGAAGGAGTTCAAGGAATTCATCGATAACGAGATGCTGCTCATC
CTGGGCCAGATGGACAAGCCCTCCCTCATCTTTGACCATCTTTATCTTGGCTCCGAGTGGAATGCATCCA
ATCTGGAGGAGCTGCAGGGCTCAGGAGTTGACTACATTTTAAATGTCACTAGAGAAATAGACAATTTTTT
CCCCGGCTTGTTTGCGTACCATAACATCCGCGTGTACGATGAGGAGACCACAGACCTTCTTGCCCACTGG
AATGAAGCTTATCATTTCATAAACAAAGCGAAAAGGAATCATTCCAAGTGCCTGGTCCATTGCAAGATGG
GCGTCAGCCGATCTGCGTCCACAGTCATTGCCTACGCCATGAAGGAGTTCGGCTGGCCCCTGGAGAAAGC
GTATAACTACGTGAAGCAGAAACGTAGTATCACTCGGCCCAACGCAGGCTTTATGAGGCAGCTGTCTGAG
TACGAAGGCATCCTGGATGCAAGCAAACAGCGGCATAACAAACTATGGCGCCAGCAGCCCACAGATGACA
CCATCGCAGAGCCCAGTGAGTTCTTGCCAGAGACCTTGGACGGAGCCCTGGACGCTCAGCTGCCCTGTTT
GGATGATACCACCCACCCTGGGCTCCCGAGAAGTCTGGCCCCAGGAGGACCCGCTCTCCCCTGTTGTTTT
CGAAGACTCTCGGACCCCCTCCTCCTTCCCCACCATGATGAAACGGGTGGCCTGGTCCACTTAGAGGATC
TCGAGAAGGATGCTCTGTTAGAGGAGGAGGAGTCTCAGCCAGTGGAGGTGCACAAGCTGGTTCAGCATCC
CCAGGAAGGTGCCAGGCTGTGTGAAAAGGACGTAAAGAGGAAACTGGAGTTTGGGAACTCCAAACCCCGC
AGTGACTCCTTGCCTCAGGTGGAGGAGCTGGAGAAGGACGGTAGCCCAAGAACGGGGAGGTGGAGGCGGG
CCTCCACCCAGCTCGATAGAAGCTTGCTCGACCAGGAAAACCTAAATAACAACAACAGCAAGAGGAGCTG
TCCCGATGACTTGGAGCGCGATGCCATGTTTGGAATTCTCAGCAAAGTGAAGCCTCCCTACACATCCTGT
GCCGACTGCATGTACCCCACAGCTGGTGGGACTCCCGAGGCCTACATGGAGCGACACGAAGACCCCAGCT
CCTCTGCTATCTGCACCCAGCCAACCTTCCTCCCCCATGTCACGTCTTCCCCAATGGCCCACGCGAGCAG
CAGGTCCCGAGCTCCGGAGAGGCCGGCCTCGGGTCCAGCCAACACCTCTCCATTCCTACTACCAGCAGGC
TCCAGGAAGCCAGATGTCAGTGGCTCTGGAGCCGGGGCTGCCCCGGAACCACCAGCAAGCCTTCTAGAGC
CTTCCAGAGAGACCTCAAAAGCCCTTCCAAAATCTCTCCAGTTGAAGAATCCTCACTGTGACAAGAACGC
TGCCAATATGGAGGTGTCGGCGAAGGAAGAACCGTCGCCTAAGAAAGATCCCAAGCCGGCTAAGGACCTG
AGGCTTCTGTTCAGTAACGAGGCGGAGAAGCCCACCACCAACAGCTACCTGATGCAGCATCAGGAGTCCA
TCATCCAACTGCAGAAGGCAGGCCTGGTCCGAAAGCACACCAAAGAGCTGGAGAGGTTGAAGAGCCTGCC
TTCAGACTCACCAGCTGCCTGCAGGGACAGCGCCACCTGCAGGCTGGAGGCCAGCATCCCGGAGGAGGGT
AGCCAGGAGCCCGCACACCCAGCCCTGTGCAGCCAAGCTGGGTCGGAAGAACAGCCTGTAGGGGGAACCT
TGCAGAAGAGCCCCACGTCTACCCTCCCCCGTTTAGATCACACCAGTAACTTCTCGAAGGACTTCCTGAA
GACCGTGTGTTACACCCCCACCTCCTCCTCCATCAGCTCCAACCTGACCCGGAGCTCCAGCAGCGACAGC
ATCCACAGCGTCCGAGGGAAGCCTGGGCTGGTGAAGCAGCGGGCGCAGGAGATCGAGACGCGGCTGCGCC
TGGCAGGCCTCACCGTGTCGTCCCCGCTGAAAAGGTCCCATTCCCTTGCCAAGCTGGGAAGTCTCAACTT
CTCCACGGAGGACCTGTCCAGCGAGGCTGACACATCCACCATCGCTGACTCGCAGGACGCCAAGTGTGGT
CTCTCCTCTTCCTTCTTGCCCGAACCCCAGTCTGCGCCAAGGGACCCCGCTGCAACCTCTAAATCATCAG
GGAAATCTGCCCCAGAACACTTGAAAAGCCCGTCGAGGGTAAACAAAAGCTGA

Translation (1020 aa):
MALVTLQRSPTPSAASSSASNSELEAGSDEERKLNLSLSESFFMVKGAALFLQQGNSPQGQRSLQHPHKH
AGDLPQHLQVMINLLRCEDRIKLAVRLESVWTDRVRYMVVVYTSGRQDTEENILLGVDFSSKESKSCTIG
MVLRLWSDTKIHLDGDGSALQVLHKACEVARRHNYFPGGVALIWATYYESCISSEQSCINEWNAMQDLES
TRPDSPALFVDKPTEGERTERLIKAKLRSIMMSQDLENVTSKEIRNELEKQMNCNLKEFKEFIDNEMLLI
LGQMDKPSLIFDHLYLGSEWNASNLEELQGSGVDYILNVTREIDNFFPGLFAYHNIRVYDEETTDLLAHW
NEAYHFINKAKRNHSKCLVHCKMGVSRSASTVIAYAMKEFGWPLEKAYNYVKQKRSITRPNAGFMRQLSE
YEGILDASKQRHNKLWRQQPTDDTIAEPSEFLPETLDGALDAQLPCLDDTTHPGLPRSLAPGGPALPCCF
RRLSDPLLLPHHDETGGLVHLEDLEKDALLEEEESQPVEVHKLVQHPQEGARLCEKDVKRKLEFGNSKPR
SDSLPQVEELEKDGSPRTGRWRRASTQLDRSLLDQENLNNNNSKRSCPDDLERDAMFGILSKVKPPYTSC
ADCMYPTAGGTPEAYMERHEDPSSSAICTQPTFLPHVTSSPMAHASSRSRAPERPASGPANTSPFLLPAG
SRKPDVSGSGAGAAPEPPASLLEPSRETSKALPKSLQLKNPHCDKNAANMEVSAKEEPSPKKDPKPAKDL
RLLFSNEAEKPTTNSYLMQHQESIIQLQKAGLVRKHTKELERLKSLPSDSPAACRDSATCRLEASIPEEG
SQEPAHPALCSQAGSEEQPVGGTLQKSPTSTLPRLDHTSNFSKDFLKTVCYTPTSSSISSNLTRSSSSDS
IHSVRGKPGLVKQRAQEIETRLRLAGLTVSSPLKRSHSLAKLGSLNFSTEDLSSEADTSTIADSQDAKCG
LSSSFLPEPQSAPRDPAATSKSSGKSAPEHLKSPSRVNKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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