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Report for CCDS90060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90060.1 Public Mus musculus 6 Mat2a 23 108 98 CCDS HistoryNCBI Gene:232087Re-query CCDS DB by CCDS ID:90060.1Re-query CCDS DB by GeneID:232087See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90060.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000206692.1 ENSMUSP00000145603.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206692.1Link to Ensembl Protein Viewer:ENSMUSP00000145603.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206692Re-query CCDS DB by Protein ID:ENSMUSP00000145603
Original member Current member NCBI NM_001363799.1 NP_001350728.1 Accepted alive Link to Nucleotide Sequence:NM_001363799.1Link to Protein Sequence:NP_001350728.1Re-query CCDS DB by Nucleotide ID:NM_001363799Re-query CCDS DB by Protein ID:NP_001350728Link to BLAST:NP_001350728.1

Chromosomal Locations for CCDS 90060.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72434727 72434739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72434981 72435114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72435206 72435388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72435811 72436029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72436197 72436340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72436417 72436529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72436995 72437117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72437371 72437448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72439346 72439436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGAACGGGCAGCTCAACGGCTTCCACGAGGCGTTCATTGAGGAGGGGACGTTCCTCTTCACTTCCGAGT
CTGTAGGGGAAGGTCACCCAGATAAGATTTGTGACCAAATCAGTGATGCTGTCCTTGATGCACACCTTCA
ACAAGACCCTGATGCTAAAGTGGCTTGTGAAACTGTTGCTAAAACTGGAATGATTCTTCTTGCTGGGGAA
ATTACATCCAGAGCTGCCATTGATTACCAGAAAGTGGTTCGTGAAGCCATAAAGCACATTGGATATGATG
ACTCTTCCAAAGGGTTTGACTACAAGACTTGTAATGTGTTGGTTGCCTTGGAACAACAGTCACCAGATAT
TGCCCAAGGTGTTCATCTTGACCGGAATGAGGAAGATATTGGTGCAGGAGACCAGGGTTTGATGTTTGGT
TATGCCACTGATGAAACTGAAGAGTGTATGCCTTTAACCATTGTCTTAGCACACAAGCTAAATGCCAAAT
TGGCTGAACTACGCCGCAATGGTACATTGCCTTGGTTACGCCCAGATTCTAAAACTCAAGTGACTGTGCA
ATATATGCAAGATCGGGGTGCTGTGCTTCCCATCAGAGTCCACACGATTGTTATATCTGTTCAGCACGAT
GAAGAAGTTTGTCTTGATGAGATGAGGGATGCTCTGAAGGAGAAAGTGATCAAGGCTGTTGTACCTGCAA
AATACCTTGATGAGGATACAATTTACCACCTACAGCCAAGTGGCAGATTTGTTATTGGTGGGCCTCAGGG
TGATGCTGGCCTGACTGGCCGAAAAATCATTGTGGATACTTATGGCGGTTGGGGAGCTCATGGAGGAGGG
GCCTTTTCAGGAAAGGATTATACCAAAGTGGACCGTTCAGCTGCTTATGCTGCTCGTTGGGTGGCAAAAT
CCCTTGTTAAAGGAGGTCTGTGCAGGAGGGTTCTTGTTCAGGTCTCTTATGCTATTGGAGTTTCTCATCC
ATTGTCGATCTCCATTTTCCATTATGGCACTTCTCAGAAGAGTGAGAGAGAGCTATTAGAAATTGTAAAG
AAGAATTTTGATCTTCGCCCTGGGGTCATTGTCAGGGTGCTACATTAA

Translation (365 aa):
MNGQLNGFHEAFIEEGTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGE
ITSRAAIDYQKVVREAIKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVHLDRNEEDIGAGDQGLMFG
YATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHD
EEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGG
AFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVK
KNFDLRPGVIVRVLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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