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Report for CCDS90424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90424.1 Public Mus musculus 8 Dcaf15 23 108 98 CCDS HistoryNCBI Gene:212123Re-query CCDS DB by CCDS ID:90424.1Re-query CCDS DB by GeneID:212123See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000210279.1 ENSMUSP00000147690.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210279.1Link to Ensembl Protein Viewer:ENSMUSP00000147690.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210279Re-query CCDS DB by Protein ID:ENSMUSP00000147690
Original member Current member NCBI NM_001357322.1 NP_001344251.1 Accepted alive Link to Nucleotide Sequence:NM_001357322.1Link to Protein Sequence:NP_001344251.1Re-query CCDS DB by Nucleotide ID:NM_001357322Re-query CCDS DB by Protein ID:NP_001344251Link to BLAST:NP_001344251.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344251.1 600 Q6PFH3-1 600 100% 0 0

Chromosomal Locations for CCDS 90424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84097453 84097508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84097737 84097852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84097936 84098040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84098199 84098284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84098362 84098490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84098579 84098670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84098758 84099192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84101676 84101846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84101932 84102071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84102164 84102270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84102746 84102881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84102956 84103053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84104617 84104748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGGCGCCCAGCTCGAAATCGGAGCGGAACAGCGGGGCCGGGAGCGCCGGCGGAGGCCCTGGGGGGACCG
GGGGGAAGCGGGCGGTGGGGCGGCGGCGGGAACACGTTCTCAAGCAGCTGGAGCGAGTCAAGATCAGTGG
GCAGCTCTCACCTCGTCTTTTCCGGAAGCTGCCCCCCAGGGTCTGCGTGTCCCTCAAGAACATCGTAGAT
GAGGATTTTCTCTATGCAGGCCATATCTTCCTGGGATTTTCCAAGTGTGGCCGCTATGTCCTCTCCTACA
CCAGCAGCAGTGGGGATGACGACTTCTCCTTCTACATATATCACCTCTACTGGTGGGAGTTCAACGTCCA
CAGCAAGCTCAAGCTGGTCCGGCAGGTGCGGCTCTTCCAGGACGAGGAGATCTACAGTGACCTGTACCTG
ACTGTGTGTGAGTGGCCTAGCGACGCTTCCAAGGTCATCGTGTTTGGTTTCAACACCCGCTCGGCCAACG
GGATGCTCATGAACATGATGATGATGAGCGATGAGAACCATCGTGACATCTACATCAGCACTGTGGCTGT
GCCACCTCGGGGCCGTTGTGCTGCCTGCCAGGATGCCAGTCGTGCCCACCCAGGGGACCCAAGCGCACAG
TGCCTGCGGCATGGCTTCATGCTGCACACCAAATACCAGGTGGTGTACCCCTTCCCCACCTTCCAACCCG
CCTTCCAACTCAAGAAGGATCAGGTGGTGCTGCTCAACACCAGCTACTCCCTGGTGGCCTGCGCTGTCTC
TGTCCACTCAGCAGGTGACAGCAGTTTCTGCCAAATCCTGTATGACCACACAGCTTTGCCCCCAGCCCCA
CCCAGTTCTCCAGGACCTTGGAGCCCTGAGGCAGCCCCAGCCTTCCCCAGTCTTGGTGTTGAGGTGGTCC
CAGCCCAGCCCTCTGGAGCCCCTGAGCCCTCACCAGCCATTGCCAAGGCCAAGGAGTTTGTAGCTGACAT
CTTCCGCAGGGCTAAAGAGGCCAAGGGTAGTCCCTTGGAGGAAACTCGGCTGCCCTCTAGCTTGGGGCCC
TCAAGCAGCCGCTGCCGCCCATCTTTAGAGCCGCAAGCCCCAAGTGGGGAAGTGGTACCCAGGGACAGCC
CTCCTGCTGCAGAGACCACTGCCCCTGAGCCTGGCTACATCAATTACACCAAGTTGCACTATGTGTTGCA
GTCTGGGGAAGGGACAGAGCCTGAGGATGAGTTTGAGGATGACAAGATCTCCCTGCCTTTTGTGGTGACT
GATCTCCGTGGCCGCAACTTACGGCCCATGCGAGAGCGGACAGACATGCAGGGCCAGTACCTGACAGTGG
AGCAGCTTACCCTGGACTTCGAGTATGTCATCAATGAGGTCATCCGCCATGATGCCACTTGGGGTCACCA
GTTCTGCTCTTTCAGTGACTATGACATAGTCATCTTGGAGGTCTGCCCAGAAACCAACCAGGTCCTGATC
AACATTGGCCTGCTGCTCTTGGCCTTTCCAGCTCCCACTGAAGAGGGCCAGCTTCGACCCAAGACCTATC
ACACCAGTCTCAAGGTGGCCTGGGACCTCAACACAGGCATCTTTGAGACAGTCAGCGTGGGTGATCTAAC
TGAGGTCAAAGGACAGACCAGTGGCAGTGTCTGGAGCTCCTACCGAAAGAGCTGTGTGGACATGGTCATG
AAATGGCTGGTGCCAGAGAGCAGTGGCCGCTATGTGAACAGGATGACAAACGAGGCACTGCACAAAGGGT
GCTCACTGAAGGTTCTGGCAGACAGTGAGCGGTACACTTGGATTGTGCTGTGA

Translation (600 aa):
MAPSSKSERNSGAGSAGGGPGGTGGKRAVGRRREHVLKQLERVKISGQLSPRLFRKLPPRVCVSLKNIVD
EDFLYAGHIFLGFSKCGRYVLSYTSSSGDDDFSFYIYHLYWWEFNVHSKLKLVRQVRLFQDEEIYSDLYL
TVCEWPSDASKVIVFGFNTRSANGMLMNMMMMSDENHRDIYISTVAVPPRGRCAACQDASRAHPGDPSAQ
CLRHGFMLHTKYQVVYPFPTFQPAFQLKKDQVVLLNTSYSLVACAVSVHSAGDSSFCQILYDHTALPPAP
PSSPGPWSPEAAPAFPSLGVEVVPAQPSGAPEPSPAIAKAKEFVADIFRRAKEAKGSPLEETRLPSSLGP
SSSRCRPSLEPQAPSGEVVPRDSPPAAETTAPEPGYINYTKLHYVLQSGEGTEPEDEFEDDKISLPFVVT
DLRGRNLRPMRERTDMQGQYLTVEQLTLDFEYVINEVIRHDATWGHQFCSFSDYDIVILEVCPETNQVLI
NIGLLLLAFPAPTEEGQLRPKTYHTSLKVAWDLNTGIFETVSVGDLTEVKGQTSGSVWSSYRKSCVDMVM
KWLVPESSGRYVNRMTNEALHKGCSLKVLADSERYTWIVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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