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Report for CCDS90517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90517.1 Public Mus musculus 9 Spc24 23 108 98 CCDS HistoryNCBI Gene:67629Re-query CCDS DB by CCDS ID:90517.1Re-query CCDS DB by GeneID:67629See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000216057.1 ENSMUSP00000151082.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216057.1Link to Ensembl Protein Viewer:ENSMUSP00000151082.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216057Re-query CCDS DB by Protein ID:ENSMUSP00000151082
Original member Current member NCBI NM_001357331.1 NP_001344260.1 Accepted alive Link to Nucleotide Sequence:NM_001357331.1Link to Protein Sequence:NP_001344260.1Re-query CCDS DB by Nucleotide ID:NM_001357331Re-query CCDS DB by Protein ID:NP_001344260Link to BLAST:NP_001344260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344260.1 160 Q9D083-2 160 99.375% 0 1

Chromosomal Locations for CCDS 90517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21756223 21756295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21757290 21757394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21757685 21757829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21760119 21760278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGGCGGCTTTCCGCGACATGGTGGAGGTGAGCAACTGGCTACTGAGCCTGCTGGGGGCCAACCGCGCCG
AGGCGCAGCAGCGGCGGCTGCTCGGGAGCTACGAGCAGATGATGGAGCGGCTGCTGGAGATGCAGGACGG
CGCCTACCGGCAGCTTCGGGAGACTCTGGCTGTGGAGGAGGAAGTGGCTCAGAGCCTTCTTGAACTGAAA
GAATGTACGCGCCAGGGGGACACCGAGCTGCAGCAGCTGGAGGTGGAGCTCCAGAGGACCAGCAAGGAGG
ACACCTGTGTGCAGGCTAGGCTACGTCAGCTCATCACAGAGCTGCAGGAGCTCAGGGAGATGGAGGAAGA
GCTCCAGCGCCAGGAGAGGGATGTAGATGAGGACAACACCGTCACCATCCCCTCTGCAGTTCCACCACGG
CCCCACAGTGGCCCAGCCCATCCACTTGGACAGTGCACAGCTCTCGCCGAAGTTCATCAGTGA

Translation (160 aa):
MAAFRDMVEVSNWLLSLLGANRAEAQQRRLLGSYEQMMERLLEMQDGAYRQLRETLAVEEEVAQSLLELK
ECTRQGDTELQQLEVELQRTSKEDTCVQARLRQLITELQELREMEEELQRQERDVDEDNTVTIPSAVPPR
PHSGPAHPLGQCTALAEVHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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