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Report for CCDS90524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90524.1 Public Mus musculus 9 Spata19 23 108 98 CCDS HistoryNCBI Gene:75469Re-query CCDS DB by CCDS ID:90524.1Re-query CCDS DB by GeneID:75469See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000214287.1 ENSMUSP00000149525.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214287.1Link to Ensembl Protein Viewer:ENSMUSP00000149525.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214287Re-query CCDS DB by Protein ID:ENSMUSP00000149525
Original member Current member NCBI NM_001305058.1 NP_001291987.1 Accepted alive Link to Nucleotide Sequence:NM_001305058.1Link to Protein Sequence:NP_001291987.1Re-query CCDS DB by Nucleotide ID:NM_001305058Re-query CCDS DB by Protein ID:NP_001291987Link to BLAST:NP_001291987.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291987.1 119 Q9DAQ9-2 119 100% 0 0

Chromosomal Locations for CCDS 90524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 27397324 27397353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27397703 27397795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27397928 27398019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27400407 27400484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 27400812 27400878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (360 nt):
ATGTCTGAGAGGATGTGGGGTTTTGGGCTGACGGAAGAGGAGGCTTCTCGGAGCATAAGGGAGAAGATGT
CCATCAACGACTCTCCCACCCATGGACATGACATACATGTGACCAGAGATTTGGTGAAACACCATCTCTC
AAAGTCTGATATGTTAACAGACCCGAGTCAAGAAGTCCTGGAGGAAAGAACAAGGATCCAGTTTATAAGA
TGGAGCCACACCCGTATCTTCCAAGTGCCAAGTGAAGTGATGGATGACGTCATGCAGGAACGAATAGATC
AAGTGAGACGAAGCGTATCTCATCTCATGTGTGACTCGTACAATGATCCAAGCTTCAGGACTTCTTGCTC
AGAATGCTAA

Translation (119 aa):
MSERMWGFGLTEEEASRSIREKMSINDSPTHGHDIHVTRDLVKHHLSKSDMLTDPSQEVLEERTRIQFIR
WSHTRIFQVPSEVMDDVMQERIDQVRRSVSHLMCDSYNDPSFRTSCSEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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