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Report for CCDS90554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90554.1 Public Mus musculus 9 Tmem25 23 108 98 CCDS HistoryNCBI Gene:71687Re-query CCDS DB by CCDS ID:90554.1Re-query CCDS DB by GeneID:71687See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114705.8 ENSMUSP00000110353.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114705.8Link to Ensembl Protein Viewer:ENSMUSP00000110353.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114705Re-query CCDS DB by Protein ID:ENSMUSP00000110353
Original member Current member NCBI NM_001357386.1 NP_001344315.1 Accepted alive Link to Nucleotide Sequence:NM_001357386.1Link to Protein Sequence:NP_001344315.1Re-query CCDS DB by Nucleotide ID:NM_001357386Re-query CCDS DB by Protein ID:NP_001344315Link to BLAST:NP_001344315.1

Chromosomal Locations for CCDS 90554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44794975 44795048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44795191 44795277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44795410 44795510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44795682 44795712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44796324 44796614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44798121 44798432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44798664 44798733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGAATTGCCTCTAAGCCAAGCTACCCTCCGGCACACACTGCTGCTCCTTCCTGCCCTCTTAAGTTCAG
GTCAAGGGGAGCTGGCGCCGCAAATTGATGGTCAGACCTGGGCTGAGAGAGCGCTTAGGGAGAATGAGCA
CCATGCCTTCACCTGTCGGGTTGCAGGAGGTTCTGCCACTCCCCGATTAGCCTGGTACCTGGATGGACAG
CTACAGGAGGCCACCACCTCCCGACTGCTGAGTGTGGGTGGGGACGCCTTCTCTGGAGGAACCAGCACTT
TCACTGTTACTGCCCAGCGCTCCCAACATGAGCTTAACTGCTCCCTGCAGGACCCAGGGAGTGGCCGGCC
AGCCAATGCCTCTGTCATCCTCAATGTGCAATTCAAACCAGAGATTGCCCAGGTTGGAGCCAAATACCAG
GAAGCTCAGGGCCCAGGCCTTCTGGTTGTCCTGTTTGCCCTGGTGCGGGCCAACCCACCTGCCAATGTCA
CCTGGATTGACCAGGATGGGCCAGTGACTGTCAATGCCTCTGACTTCCTGGTGCTGGATGCTCAGAACTA
TCCCTGGCTCACCAACCACACTGTGCAGCTGCAGCTCCGGAGCTTGGCACACAACCTCTCGGTGGTGGCC
ACCAATGACGTGGGTGTCACTAGCGCTTCCCTTCCAGCTCCAGGCCCCTCCCGGCGTCCTTCTCTGATAT
CTAGTGACTCCAATAACCTGAAACTGAATAATGTGCGCCTGCCACGGGAGAACATGTCCCTCCCATCCAA
CCTTCAGCTCAATGACCTCACTCCAGATCTCAGAGGGAAAGCAACAGAGCGGCCAATGGCTCAGCATAGC
AGCCGTCCAGAGCTTCTAGAAGCCGAGCCTGGTGGCCTCCTCACCAGCCGAGGTTTCATCCGTCTCCCGA
TGTTGGGCTACATCTACCGTGTGTCCAGTGTAAGCAGTGATGAGATTTGGCTCTGA

Translation (321 aa):
MELPLSQATLRHTLLLLPALLSSGQGELAPQIDGQTWAERALRENEHHAFTCRVAGGSATPRLAWYLDGQ
LQEATTSRLLSVGGDAFSGGTSTFTVTAQRSQHELNCSLQDPGSGRPANASVILNVQFKPEIAQVGAKYQ
EAQGPGLLVVLFALVRANPPANVTWIDQDGPVTVNASDFLVLDAQNYPWLTNHTVQLQLRSLAHNLSVVA
TNDVGVTSASLPAPGPSRRPSLISSDSNNLKLNNVRLPRENMSLPSNLQLNDLTPDLRGKATERPMAQHS
SRPELLEAEPGGLLTSRGFIRLPMLGYIYRVSSVSSDEIWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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