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Report for CCDS90599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90599.1 Public Mus musculus 9 Igdcc3 23 108 98 CCDS HistoryNCBI Gene:19289Re-query CCDS DB by CCDS ID:90599.1Re-query CCDS DB by GeneID:19289See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217371.1 ENSMUSP00000149084.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217371.1Link to Ensembl Protein Viewer:ENSMUSP00000149084.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217371Re-query CCDS DB by Protein ID:ENSMUSP00000149084
Original member Current member NCBI NM_001357257.1 NP_001344186.1 Accepted alive Link to Nucleotide Sequence:NM_001357257.1Link to Protein Sequence:NP_001344186.1Re-query CCDS DB by Nucleotide ID:NM_001357257Re-query CCDS DB by Protein ID:NP_001344186Link to BLAST:NP_001344186.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344186.1 813 Q8BQC3-1 813 100% 0 0

Chromosomal Locations for CCDS 90599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 65141415 65141553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65144256 65144561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65177395 65177539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65177866 65177996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65178376 65178513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65180041 65180199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65181136 65181301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65181525 65181772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65181956 65182120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65182702 65182893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65183000 65183104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65183773 65183911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65184033 65184240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65185134 65185334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2442 nt):
ATGGCTGAGCCGCGCACCGCGTCCCCGCGCCGCCTGCCCGCGCTGCGCCGGCCCGGGTTTCTGCCGCCGT
TGCTGCCGCCGCCGCCGCCGCCGCTGCTGTTGCTGCTGCTGCTGTTGCCGCTGCCTGCGCCAAGCCTGGG
TCTGGGCCATTCTGCTGAACTGGCATTTTCTGTGGAGCCAAATGATGATATTGCCAACCCTGGGCAGCCC
ATAGTGCTGGGCTGCAAAGTGGAGGGCACCCCTCCAGTGCAAGTCTCCTGGAGGAAGAATGGAGCAGAGC
TACCAGAGGGCACCCACACCACTCTGCTGGCCAATGGCTCCTTGCTGATCCACCACTTCAGGCTGGAGCA
AGGAGGTAGCCCTTCAGATGAGGGTGACTATGAATGTGTGGCTCAGAACCGCTTTGGGCTGCTGGTCAGT
CGGAAGGCTCGTCTCCAGGCTGCAACTATGTCCGACTTCCACGTACACCCCCAGGCCGTCACGGGTGAGG
AGGGTGGTGTGGCCCGCTTCCAGTGCCAAATCCATGGGCTTCCCAAGCCCCTGATCACATGGGAGAAGAA
CAGAGTTCCCATTGACACGGACGATGAGAGGTACACACTACTGCCCAAGGGAGTCCTGCAGATAACAGGA
CTTCGGGCTGAGGACAGCGGCATCTTCCACTGTGTGGCCTCAAACATTGCTAGTGTGCGGGTCAGCCACG
GGGCCAGGCTCACTGTGTCAGGCTCGGGCTCAGGGACCTACAAGGAGCCCACCATTCTTGTGGGGCCTGA
GAACCTCACCCTGACAGTGCACCAGACTGCGGTGCTGGAGTGTGTCGCCACGGGCAACCCGCGCCCCATT
GTGTCCTGGAGCCGCTTGGATGGCCGCCCCATTGGGGTGGAGGGCATCCAGGTGCTGGGCACAGGAAACC
TTATCATCTCAGATGTGACTGTCCAGCATTCAGGTGTCTATGTCTGTGCAGCCAACAGGCCTGGCACCCG
GGTGAGAAGGACGGCCCAGGGTCGGCTGGTGGTACAAGCTCCAGCAGAGTTTGTTCAGCATCCCCAGTCC
ATCTCCAGGCCTGCTGGGACCACAGCCATGTTCACCTGCCAAGCGCAGGGGGAGCCACCGCCTCATGTCA
CATGGTTGAAGAATGGACAAGTGCTGGGGGCAGGAGGCCATGTCAGGCTCAAGAACAATAACAGCACACT
GAGCATTTCTGGAGTCGGACCTGAAGATGAGGCCATCTACCAATGTGTGGCTGAGAACATTGCTGGCTCG
TCGCAAGCCAGCGCCAGGCTGACCGTGCTGTGGGCTGAGGGGTTGCCAGGCCCCCCACGCAATGTCCGAG
CTGTCTCTGTGTCCTCCACTGAAGTTCGAGTGTCCTGGAGTGAGCCTCTGGCCCACACCAAAGAGATCAT
TGGCTATGTCTTGCACATCAGGAAGGCTGCCGACTCACCCAAGCTAGAGTACCAGGAAGCTGTCAGCAAG
AGCACCTTTCAGCACCTGGTGAGAGACCTTGAGCCCTCCACTGCCTACAGCTTCTACATCAAAGCCTACA
CACCACGAGGGGCCAGTTTAGCCTCTGTCCCCACCCTGGCCAGCACCCTGGGTGAAGCCCCTGTCCCACC
CCCATTATCTGTGCGGTTGCTGGGCAGCTCCTCTCTACAACTGCTATGGAAGCCCTGGCCACGGCTGGCC
CAACACAATGGAGGCTTCAAGCTGTTTTACCGCCCAGTCAGTGCAACCTCCTTCACTGGCCCCATCTTGC
TCCCTGGGACTGTCTCCTCTTACAACCTCAGCCAGCTTGACCCCAGCACCGTGTACGAGGTGAAGCTCCT
GGCCTACAACCAGCATGGAGATGGAAACGCCACGGTCCGATTTGTGTCTCTGAAGGGAGCCTCTGAGAGG
ACAGCCCTGACTCCCCCATGTGACTGCCGGAAGGAAGATGTCACCAACCATACGTCCACTACAGGCATTG
TTATCGGCATCCACATCGGAGTCACCTGCATCATCTTCTGCGTCCTCTTTCTTCTGTTTGGCCAGAGGGG
CAGGGTCCTCCTGTGTAAGGATGTGGAAAACCAGCTCTCCCCTCCCCAGGGTCCCCGGAGCCAGAGGGAC
CCTGGTATCCTGGCCCTGAATGGACTGAGCCGAGGAGAAGGGGGCCAGCTGAGCCGAGATGAAAAGCCGG
TGGACGCCAAGGAGTTGGAACAGCTGTTTCCCACAGCTGGGTCAGCTGCACAGCCAGGCTCCACACCCAC
GGATCCTGCAGCCCCTGCTCCATGTGAGGAGACCCAGCTCTCCATGGTTCAGCTTCAAGGCTTCAACCTT
GTGGCAGGGAGGACAACAGAGGCCACGTCCCCCTGTGCAGGGCCTGGGCCTGTCCCAGCACCCCAGGATA
TAGGCCCTGTCCCCCTCAGTGAAGGACAGACCCAGCCTCCAGCAGTCGCAGCACCCCAGTGA

Translation (813 aa):
MAEPRTASPRRLPALRRPGFLPPLLPPPPPPLLLLLLLLPLPAPSLGLGHSAELAFSVEPNDDIANPGQP
IVLGCKVEGTPPVQVSWRKNGAELPEGTHTTLLANGSLLIHHFRLEQGGSPSDEGDYECVAQNRFGLLVS
RKARLQAATMSDFHVHPQAVTGEEGGVARFQCQIHGLPKPLITWEKNRVPIDTDDERYTLLPKGVLQITG
LRAEDSGIFHCVASNIASVRVSHGARLTVSGSGSGTYKEPTILVGPENLTLTVHQTAVLECVATGNPRPI
VSWSRLDGRPIGVEGIQVLGTGNLIISDVTVQHSGVYVCAANRPGTRVRRTAQGRLVVQAPAEFVQHPQS
ISRPAGTTAMFTCQAQGEPPPHVTWLKNGQVLGAGGHVRLKNNNSTLSISGVGPEDEAIYQCVAENIAGS
SQASARLTVLWAEGLPGPPRNVRAVSVSSTEVRVSWSEPLAHTKEIIGYVLHIRKAADSPKLEYQEAVSK
STFQHLVRDLEPSTAYSFYIKAYTPRGASLASVPTLASTLGEAPVPPPLSVRLLGSSSLQLLWKPWPRLA
QHNGGFKLFYRPVSATSFTGPILLPGTVSSYNLSQLDPSTVYEVKLLAYNQHGDGNATVRFVSLKGASER
TALTPPCDCRKEDVTNHTSTTGIVIGIHIGVTCIIFCVLFLLFGQRGRVLLCKDVENQLSPPQGPRSQRD
PGILALNGLSRGEGGQLSRDEKPVDAKELEQLFPTAGSAAQPGSTPTDPAAPAPCEETQLSMVQLQGFNL
VAGRTTEATSPCAGPGPVPAPQDIGPVPLSEGQTQPPAVAAPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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