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Report for CCDS90617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90617.1 Public Mus musculus 9 Lipc 23 108 98 CCDS HistoryNCBI Gene:15450Re-query CCDS DB by CCDS ID:90617.1Re-query CCDS DB by GeneID:15450See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90617.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000216798.1 ENSMUSP00000149185.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216798.1Link to Ensembl Protein Viewer:ENSMUSP00000149185.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216798Re-query CCDS DB by Protein ID:ENSMUSP00000149185
Original member Current member NCBI NM_001324473.1 NP_001311402.1 Accepted alive Link to Nucleotide Sequence:NM_001324473.1Link to Protein Sequence:NP_001311402.1Re-query CCDS DB by Nucleotide ID:NM_001324473Re-query CCDS DB by Protein ID:NP_001311402Link to BLAST:NP_001311402.1

Chromosomal Locations for CCDS 90617.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 70798267 70798408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70802073 70802291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70803697 70803814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70812670 70812912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70816530 70816763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70818849 70818966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70820360 70820542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 70823373 70823393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGATCATCCACGGGTGGTCGGTGGATGGCTTGCTAGAAAACTGGATCTGGAAGATAGTGAGTGCGCTGA
AGTCCCGACAGTCCCAACCTGTGAATGTGGGGTTAGTGGACTGGATCTCCCTGGCATACCAGCACTACAC
CATTGCTGTTCAAAACACCCGTATTGTGGGCCAGGACGTGGCTGCTCTTCTCCTATGGCTGGAGGAATCT
GCGAAGTTTTCTCGGAGCAAAGTTCACCTAATTGGGTACAGCCTGGGAGCGCACGTCTCAGGGTTCGCAG
GCAGCTCCATGGACGGGAAGAACAAGATTGGAAGAATCACAGGGCTGGACCCTGCGGGCCCTATGTTTGA
GGGAACGTCCCCCAACGAGCGCCTTTCTCCTGATGATGCCAATTTTGTGGACGCCATTCATACCTTTACC
AGGGAGCACATGGGCTTGAGTGTGGGCATCAAGCAGCCCATTGCCCACTATGACTTCTACCCCAATGGGG
GCTCCTTCCAGCCTGGCTGCCACTTCCTGGAACTCTACAAACACATTGCAGAGCATGGCTTAAACGCCAT
AACCCAGACCATCAAATGTGCCCATGAGCGCTCCGTGCACCTCTTCATTGACTCCTTGCAACACAGTGAC
CTGCAGAGCATCGGCTTCCAGTGCAGCGACATGGGCAGCTTCAGCCAAGGTCTATGCCTGAGCTGCAAGA
AGGGCCGTTGCAACACTCTGGGTTATGACATCCGCAAGGACCGGTCAGGCAAGAGCAAGAGGCTCTTCCT
CATCACGCGAGCCCAGTCTCCCTTCAAAGTTTATCATTACCAGTTCAAGATCCAGTTCATCAATCAAATT
GAGAAGCCGGTAGAGCCTACTTTTACCATGTCGCTGCTGGGAACAAAAGAAGAAATAAAGAGAATTCCCA
TCACCCTGGGCGAAGGAATTACCAGCAATAAAACCTATTCCTTCCTTATCACACTGGACAAAGACATCGG
CGAGTTGATCCTGCTCAAGTTCAAGTGGGAAAACAGTGCAGTGTGGGCCAATGTGTGGAACACAGTGCAG
ACCATCATGCTATGGGGCATAGAACCTCACCACTCTGGCCTCATTCTGAAGACCATCTGGGTCAAAGCTG
GAGAGACGCAGCAAAGAATGACATTTTGCCCCGAAAATCTGGATGACCTCCAGCTTCACCCGAGCCAGGA
GAAAGTCTTTGTGAACTGTGAAGTGAAGTCAAAAAGACTGACTGAATCGAAAGAGCAGATGAGTCAAGAG
ACCCATGCAAAAAAATAA

Translation (425 aa):
MIIHGWSVDGLLENWIWKIVSALKSRQSQPVNVGLVDWISLAYQHYTIAVQNTRIVGQDVAALLLWLEES
AKFSRSKVHLIGYSLGAHVSGFAGSSMDGKNKIGRITGLDPAGPMFEGTSPNERLSPDDANFVDAIHTFT
REHMGLSVGIKQPIAHYDFYPNGGSFQPGCHFLELYKHIAEHGLNAITQTIKCAHERSVHLFIDSLQHSD
LQSIGFQCSDMGSFSQGLCLSCKKGRCNTLGYDIRKDRSGKSKRLFLITRAQSPFKVYHYQFKIQFINQI
EKPVEPTFTMSLLGTKEEIKRIPITLGEGITSNKTYSFLITLDKDIGELILLKFKWENSAVWANVWNTVQ
TIMLWGIEPHHSGLILKTIWVKAGETQQRMTFCPENLDDLQLHPSQEKVFVNCEVKSKRLTESKEQMSQE
THAKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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