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Report for CCDS9072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9072.1 Public Homo sapiens 12 GARIN6 24 110 108 CCDS HistoryNCBI Gene:196472Re-query CCDS DB by CCDS ID:9072.1Re-query CCDS DB by GeneID:196472See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9072.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324341.2 ENSP00000315247.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324341.2Link to Ensembl Protein Viewer:ENSP00000315247.1Re-query CCDS DB by Nucleotide ID:ENST00000324341Re-query CCDS DB by Protein ID:ENSP00000315247
Original member Current member NCBI NM_153364.4 NP_699195.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153364.4Link to Protein Sequence:NP_699195.1Re-query CCDS DB by Nucleotide ID:NM_153364Re-query CCDS DB by Protein ID:NP_699195Link to BLAST:NP_699195.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_699195.1 241 Q8NEG0 241 100% 0 0

Chromosomal Locations for CCDS 9072.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 99648175 99648789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 99649288 99649398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGGAGGACTGCTGTATGCTACCGTATTACACGGCCCAAAGCAGCCCCGCAATGGGCATGTTTAACACCT
CCATGGGGAAGCTGCAGCGGCAACTGTACAAAGGCGAGTATACTATATTCAGGTATGCACCCATGTTTGA
GAGCGACTTTATCCAGATCAGCAAAAGAGGAGAAGTGATTGACGTGCACAACCGTGCCCGAATGGTAACA
ATGGGCATCGTTCGCACCAGCCCCTGCCTCACACTACCTGATGTCATGCTGCTGGCCCGACCAGCTGCTG
TCTGTGACAATGCCAGGTGTGGTCCTGCCACCCAGAAAAGAGAAAGTCCGCCTGCAGAGATCTTAGAACT
AACCAGGCTGCTTCCCTTGATGTTTGTGAAAATAACCATCCACAACAGCGTAAAAAAACAGCTCCACCTG
AAGCTTGCCACGGGCCGCTCTTTTTATCTTCAGCTGTGTCCTCCATCGGATGCAAGTGAAGACCTTTTTG
TTCACTGGGAAAACCTTGTTTACATCCTGAGACCACCAGTGGAGGCTTACAGTGATACCAGGGCTATCCT
AGCTGGGAACACATTGGACTCATCTGTGTTGGAGGAAGTGCAGAGGAGCCCAGTGGGATATGCCATGAAG
TTTTGTGAAGAGAAGGAGCAATTCAGAATCAGTAGACTTCACATGAATGCTGAAATGTTTGGGTCCACCT
ATTGTGATTATACAATAGAGATATGA

Translation (241 aa):
MEDCCMLPYYTAQSSPAMGMFNTSMGKLQRQLYKGEYTIFRYAPMFESDFIQISKRGEVIDVHNRARMVT
MGIVRTSPCLTLPDVMLLARPAAVCDNARCGPATQKRESPPAEILELTRLLPLMFVKITIHNSVKKQLHL
KLATGRSFYLQLCPPSDASEDLFVHWENLVYILRPPVEAYSDTRAILAGNTLDSSVLEEVQRSPVGYAMK
FCEEKEQFRISRLHMNAEMFGSTYCDYTIEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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