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Report for CCDS90746.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90746.1 Public Mus musculus X Chm 23 108 98 CCDS HistoryNCBI Gene:12662Re-query CCDS DB by CCDS ID:90746.1Re-query CCDS DB by GeneID:12662See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90746.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113388.2 ENSMUSP00000109015.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113388.2Link to Ensembl Protein Viewer:ENSMUSP00000109015.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113388Re-query CCDS DB by Protein ID:ENSMUSP00000109015
Original member Current member NCBI NM_001370789.1 NP_001357718.1 Accepted alive Link to Nucleotide Sequence:NM_001370789.1Link to Protein Sequence:NP_001357718.1Re-query CCDS DB by Nucleotide ID:NM_001370789Re-query CCDS DB by Protein ID:NP_001357718Link to BLAST:NP_001357718.1

Chromosomal Locations for CCDS 90746.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 113043444 113043635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113047336 113047496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113053062 113053160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113064847 113064943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113069579 113069642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113071917 113072021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113080138 113080215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113110176 113110401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113111929 113112049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113116016 113116430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113139336 113139460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113140714 113140786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113159504 113159570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113185441 113185489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGGCGGATAATCTCCCTTCGGACTTTGATGTGATCGTAATAGGGACGGGTCTGCCTGAATCCATCATTG
CAGCTGCATGTTCAAGGAGTGGCCAGAGGGTTCTGCATGTTGATTCAAGAAGCTACTATGGAGGAAACTG
GGCCAGTTTCAGCTTTTCAGGACTGTTGTCCTGGCTAAAGGAATACCAGGAAAATAGTGATGTTGTGACT
GAAAATTCAATGTGGCAAGAACAGATACTTGAAAACGAAGAAGCTATTCTTCTTAGTAGCAAGGACAAAA
CAATTCAACATGTAGAAGTATTTTGTTATGCCAGTCAGGATTTGCACAAAGATGTTGAAGAAGCTGGTGC
ACTGCAGAAAAATCCTGCTTCAGTGATGTCCGCACAGGCCACAGAGGCCGCAGAGGCTGCAGAGGCCGCA
GAGGCTGCAGAGGCCACAGAGGCTGCAGAGGCCGCTTGCCTTCCTACTGCAGAGGAGTCCTTAAGCACGA
GGAGCTGTGAACTACCTGCAGAACAAAGTCAGTGCACGGGGCCAGAGAGTTCACCACAAGTAAATGATGC
TGAAGTAGGAGAGAAAGAAACTCAGAGTGATGCAAAAAGTTCAACAGAACAATCAAGTGAAATTTTGCCT
AAAGTACAAGACAACACAGAGACACCAAAGAGAAATGTAATTACTTACTCACAGATTATTAAAGAAGGCC
GAAGATTTAACATTGATTTAGTATCAAAAGTCCCCTGTTCCAGAGCAGATGTCTTCAATAGCAAACAACT
TACTATGGTAGAAAAGCGAATGCTTATGAAATTTCTTACATTTTGTGTGGAATATGAAGACCATCCCGAT
GAGTACAAAGCATACGAGGAAACTACATTTTCTGAATACTTAAAAACTCAAAAATTAACCCCCAACCTAC
AATATTTTGTCCTGCACTCAATTGCAATGACATCAGAGACAACAAGCAGTACTGTAGATGGTCTCAAAGC
TACTAAAAAGTTTCTTCAGTGTCTTGGGCGGTATGGCAACACTCCATTTCTGTTTCCTTTATATGGCCAA
GGAGAACTTCCACAGTGTTTTTGCAGAATGTGTGCTGTGTTTGGTGGAATCTATTGTCTTCGCCATTCAG
TACAGTGCCTTGTAGTGGACAAAGAATCCAGAAAATGTAAAGCAATTGTAGATCAGTTTGGTCAAAGGAT
AATCTCTAAACATTTCGTTATTGAAGACAGTTACCTTTCTGAGAATACATGTTCCGGTGTACAGTACAGG
CAAATTTCCAGGGCAGTCCTGATTACAGATGGATCAGTACTAAAACCCGATTCTGATCAACAGGTCTCCA
TTTTGACAGTGCCAGCAGAAGAGTCAGGAAGTTTTGCTGTTCGAGTCATTGAGTTATGCTCTTCAACAAT
GACATGCATGAAAGGCACATACTTGGTACATTTGACTTGCATGTCTTCTAAAACAGCAAGAGAAGATTTA
GAACGAGTAGTCCAGAAATTGTTTACTCCATATACAGAAATCGAAGCAGAAAATGAACAGGTTGAAAAGC
CAAGAATTCTATGGGCACTCTACTTCAATATGAGAGACTCTTCGGATATCAGCAGAGATTGTTATAATGA
TTTACCGTCCAATGTCTATGTGTGCTCTGGCCCTGACTGTAATCTAGGAAATGATAATGCAGTCCAACAG
GCGGAAACAGTTTTCCAGAAAATCTGCCCAAATGAAGACTTCTGTCCAGCCCCACCAAATCCTGAAGATA
TTATTCTTGATGGAGACAGCTCACAACAAGAAGTTTCAGAATCCAGTGTCATACCAGAAACCAACTCAGA
AACTCCCAAGGAAAGTACAGTCCTAGGAGACTCAGAAGAGCCCTCTGAATAG

Translation (623 aa):
MADNLPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENSDVVT
ENSMWQEQILENEEAILLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNPASVMSAQATEAAEAAEAA
EAAEATEAAEAACLPTAEESLSTRSCELPAEQSQCTGPESSPQVNDAEVGEKETQSDAKSSTEQSSEILP
KVQDNTETPKRNVITYSQIIKEGRRFNIDLVSKVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEDHPD
EYKAYEETTFSEYLKTQKLTPNLQYFVLHSIAMTSETTSSTVDGLKATKKFLQCLGRYGNTPFLFPLYGQ
GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSYLSENTCSGVQYR
QISRAVLITDGSVLKPDSDQQVSILTVPAEESGSFAVRVIELCSSTMTCMKGTYLVHLTCMSSKTAREDL
ERVVQKLFTPYTEIEAENEQVEKPRILWALYFNMRDSSDISRDCYNDLPSNVYVCSGPDCNLGNDNAVQQ
AETVFQKICPNEDFCPAPPNPEDIILDGDSSQQEVSESSVIPETNSETPKESTVLGDSEEPSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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